Alignments for a candidate for argH in Azorhizobium caulinodans ORS 571

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_012173181.1 AZC_RS23880 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_000010525.1:WP_012173181.1
          Length = 462

 Score =  419 bits (1076), Expect = e-121
 Identities = 220/457 (48%), Positives = 295/457 (64%), Gaps = 1/457 (0%)

Query: 5   NHKLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAATIK 64
           ++K+WGGRF  G    +EE   SI FDQ+L   D+ GS AH  ML  + II+ +DA  I+
Sbjct: 2   SNKMWGGRFSTGPDAIMEEINVSIGFDQRLYAQDIAGSKAHAAMLSAQKIIAAKDAQKIQ 61

Query: 65  AGLEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMHLY 124
            GL+ +L E +AG+  F    EDIHMN+ES L   IG  AG+LHTARSRNDQVATD  LY
Sbjct: 62  KGLDTILSEIEAGKFTFRRDLEDIHMNVESRLAELIGAPAGRLHTARSRNDQVATDFRLY 121

Query: 125 LKAKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTRDS 184
           ++  +D + E++A+L+  L + A  H  T+MPG+THLQ+AQP++FGHHLMAY  M  RD 
Sbjct: 122 VRDTIDTLDEQMADLQRALAEKALAHAGTVMPGFTHLQNAQPVTFGHHLMAYVEMLGRDR 181

Query: 185 ERFIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEFLS 244
            RF    K  + SPLG+AALAGT+FPIDRE TA  +GF  P +NSLD VSDRDF++E L+
Sbjct: 182 GRFADARKRLNESPLGSAALAGTSFPIDREATAAALGFDRPTANSLDGVSDRDFVMETLA 241

Query: 245 NASILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGRVY 304
            ASI  +H+SR  EE++ W S  +  V L+D F+TGSSIMPQK+NPD AEL R KSGR+ 
Sbjct: 242 AASICAVHLSRFAEEIVIWTSPAFGLVKLTDAFTTGSSIMPQKRNPDAAELARAKSGRII 301

Query: 305 ANLFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAEST 364
             L G+L VMK LPLAY KD QEDKEG FD    +++ +  +AGM+  M      M  + 
Sbjct: 302 GALTGILVVMKGLPLAYAKDTQEDKEGTFDALSALSLVIAAIAGMVRDMEPEATRMKAAA 361

Query: 365 QKDFSNATELADYLA-SKGMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLIEE 423
            + ++ AT+LAD+L  +  +PFR+AH + G+++   S+ G  L  + LE  Q +   I +
Sbjct: 362 GQGYATATDLADWLVRTLNIPFREAHHVTGRIVALASERGVPLHRLSLEEMQGVEKRITQ 421

Query: 424 DVYETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460
           DV+  L    +V  R S GGT   +V+ Q     K L
Sbjct: 422 DVFSVLSVTNSVRSRTSYGGTAPARVRQQARRWLKKL 458


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 568
Number of extensions: 20
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 462
Length adjustment: 33
Effective length of query: 427
Effective length of database: 429
Effective search space:   183183
Effective search space used:   183183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_012173181.1 AZC_RS23880 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.20411.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20411.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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