Alignments for a candidate for DAPtransferase in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align LL-diaminopimelate aminotransferase; DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase; EC 2.6.1.83 (characterized)
to candidate WP_012282103.1 HM1_RS04450 LL-diaminopimelate aminotransferase

Query= SwissProt::Q18T09
         (411 letters)



>NCBI__GCF_000019165.1:WP_012282103.1
          Length = 409

 Score =  684 bits (1766), Expect = 0.0
 Identities = 330/410 (80%), Positives = 369/410 (90%), Gaps = 1/410 (0%)

Query: 1   MAQINENYLKLPGSYLFSEIARRVNEFKVQNPDADIIRLGIGDVTRPLAPVVVEAMKQAV 60
           MA +NENYLKLPGSYLFSEIARRVN+FK  NP+ADIIRLGIGDVTRPL P VVEAMK+AV
Sbjct: 1   MALVNENYLKLPGSYLFSEIARRVNQFKKANPEADIIRLGIGDVTRPLVPAVVEAMKKAV 60

Query: 61  EEMGRAETFRGYGPEQGYDFLIEKIIANDYAPRGVQLGMDEVFVSDGAKSDTANFQEIFG 120
           +EMGRAETFRGYGPEQGYDFLI +II NDY PRG+ LGMDEVFVSDG+K DTANFQEI G
Sbjct: 61  DEMGRAETFRGYGPEQGYDFLIGQIIENDYKPRGIDLGMDEVFVSDGSKCDTANFQEILG 120

Query: 121 VDNIMAVTDPVYPVYVDSNVMAGRTGNYDTEKGQYGRIIYLPCTEEGDMKPELPTAPVDM 180
           + NI+AVTDPVYPVYVDSNVMAGR+G ++ EKGQ+  I+YLPCTE   MKPELP   VDM
Sbjct: 121 IGNIVAVTDPVYPVYVDSNVMAGRSGAFN-EKGQFDDIVYLPCTEANGMKPELPKTRVDM 179

Query: 181 IYLCFPNNPTGMTLTKEELKVWVDYARENKAIILFDSAYEAFIREEGVPRSIYEVEGARE 240
           IYLCFPNNPTGMTLTKEELK WVDYARENK+IIL+D+AYEAFI+E  +PRSIYE+EGARE
Sbjct: 180 IYLCFPNNPTGMTLTKEELKQWVDYARENKSIILYDAAYEAFIQEAHIPRSIYEIEGARE 239

Query: 241 VAVEFRSFSKTAGFTGTRCAYTVVPKDIMIYDSTGEGHSLNKLWLRRQTTKFNGVSYPVQ 300
           VAVEFRSFSKTAGFTGTRCA+TVVPK++M YD  G  +SLN LWLRRQTTKFNGVSYPVQ
Sbjct: 240 VAVEFRSFSKTAGFTGTRCAFTVVPKEVMAYDREGRAYSLNGLWLRRQTTKFNGVSYPVQ 299

Query: 301 AGAAAVYTEEGKKQIQATIDYYMENARIIREGLQEAGFKVFGGVNAPYIWMKTPGTMGSW 360
           A AAA+YTE GKKQ++ TI+YYMENARIIREGL EAG+KVFGGVNAPYIW+KTP  M SW
Sbjct: 300 AAAAAIYTEAGKKQVKETIEYYMENARIIREGLVEAGYKVFGGVNAPYIWLKTPDNMSSW 359

Query: 361 EFFDKLMTEAHVVGTPGAGFGANGEGFFRLTAFGTRENTEKAIERIKARM 410
           +FFDKL++ A+VVGTPGAGFGA+GEG+FRLTAFGTRENT KA+ERI+ RM
Sbjct: 360 DFFDKLISVANVVGTPGAGFGASGEGYFRLTAFGTRENTVKALERIRTRM 409


Lambda     K      H
   0.318    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 648
Number of extensions: 21
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 409
Length adjustment: 31
Effective length of query: 380
Effective length of database: 378
Effective search space:   143640
Effective search space used:   143640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012282103.1 HM1_RS04450 (LL-diaminopimelate aminotransferase)
to HMM TIGR03542 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))

Software error:

../bin/blast/fastacmd -i /tmp/list.15532.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15532.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.