Alignments for a candidate for ilvE in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align branched-chain amino acid aminotransferase 2; EC 2.6.1.42 (characterized)
to candidate WP_012282596.1 HM1_RS06865 branched-chain-amino-acid transaminase

Query= CharProtDB::CH_012531
         (298 letters)



>NCBI__GCF_000019165.1:WP_012282596.1
          Length = 290

 Score =  343 bits (881), Expect = 2e-99
 Identities = 168/286 (58%), Positives = 218/286 (76%)

Query: 6   IFLNGEFVPKDEAKVSVYDHGYLYGDGVFEGIRVYSGNVFRLREHLVRLYESAKSIMLEI 65
           I+L+G FVP+++A++SV+DHG+LYGDG+FEGIR Y+G VF+L  H+ RLY+SAK+I L I
Sbjct: 5   IYLDGCFVPEEQARISVFDHGFLYGDGIFEGIRAYNGRVFKLDAHIDRLYDSAKAIQLAI 64

Query: 66  PYSLDEITNIVVETIRQNKLSNGYIRLVVSRGAGNLGLDPDSCTKPNVVVIAEQLSLFPQ 125
           P    E+ ++V+ET+R+N L + YIRLVVSRG G+LGLDP  C    V+ IA  ++L+P 
Sbjct: 65  PMGKGEMVDVVLETLRRNHLRDAYIRLVVSRGKGDLGLDPRKCPGATVMCIAAGITLYPP 124

Query: 126 EYYEKGIPVVTVATRRNRPDVLSPQVKSLNYLNNILVRIEAKLAGVQEALMLNDQGYVAE 185
           E+YEKG+ VVTVATRRN P+ L+P++KSLNYLNNIL ++EA  AGV EA+MLN +GYVAE
Sbjct: 125 EFYEKGLEVVTVATRRNVPEALNPRIKSLNYLNNILAKLEAAKAGVLEAIMLNQEGYVAE 184

Query: 186 GSGDNVFIVKGNKLITPPSSAGALEGITRNAILEIGEKLGYDVREELFTRHDVYVADEVF 245
            +GDN+FI+K  +LITPP   G LEGITRN ++++  + G  V E +FTR DVY ADEVF
Sbjct: 185 CTGDNIFIIKQRRLITPPVHVGILEGITRNTVMDLAREKGIPVVEAVFTRFDVYTADEVF 244

Query: 246 LTGTAAEVIAVTTVDGRTIGLGQTGPHTNRLLEEFRKLVIEDGEKI 291
           LTGTAAEVI V TVDGRTIG G  GP T+ L+  FR+     G  I
Sbjct: 245 LTGTAAEVIPVVTVDGRTIGEGVPGPMTSDLIAAFREYARNQGTPI 290


Lambda     K      H
   0.317    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 291
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 290
Length adjustment: 26
Effective length of query: 272
Effective length of database: 264
Effective search space:    71808
Effective search space used:    71808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_012282596.1 HM1_RS06865 (branched-chain-amino-acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.13792.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13792.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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