Alignments for a candidate for ilvC in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align ketol-acid reductoisomerase (NAD+) (EC 1.1.1.382); ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_012282599.1 HM1_RS06880 ketol-acid reductoisomerase

Query= BRENDA::C8WR67
         (344 letters)



>NCBI__GCF_000019165.1:WP_012282599.1
          Length = 331

 Score =  476 bits (1226), Expect = e-139
 Identities = 228/330 (69%), Positives = 273/330 (82%), Gaps = 1/330 (0%)

Query: 3   KIYYDADISIQPLADKRIAVIGYGSQGHAHAQNLRDSGFDVVIGLRPGSSWAK-AEADGF 61
           K+YYDAD  +  L  K +AVIGYGSQGHA AQNL+DSG +V+IGLRP S+  K A+A GF
Sbjct: 2   KMYYDADADLSLLEGKIVAVIGYGSQGHAQAQNLKDSGVNVIIGLRPDSNRVKEAQAYGF 61

Query: 62  RVMAVGEAVEESDVIMILLPDERQPAVYEREIRPYLTAGKALAFAHGFNIHFSQIQPPKD 121
            V +V EA  ++D+I IL+PDE+Q  VY  EI PYLT GKAL F+HGFNIHF QIQPPK+
Sbjct: 62  EVYSVAEAAAKADIIQILIPDEKQGKVYREEIAPYLTEGKALCFSHGFNIHFGQIQPPKN 121

Query: 122 VDVFMVAPKGPGHLVRRVYEAGGGVPALIAVHQDASGQAKDLALAYARGIGAGRAGILTT 181
           VDVFMVAPK PGH+VRR+Y  G GVP LIAV+QDA+G+AKDLALAYA+G G  RAG++ T
Sbjct: 122 VDVFMVAPKSPGHMVRRMYTMGAGVPTLIAVYQDATGRAKDLALAYAKGTGGTRAGVIET 181

Query: 182 TFREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPEIAYFECLHEMKLIVDLIYEG 241
           TFREETETDLFGEQAVLCGG SAL+KAGFETLVEAGY PE+AYFECLHE+KLIVDL+YEG
Sbjct: 182 TFREETETDLFGEQAVLCGGASALVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEG 241

Query: 242 GLEYMRYSISDTAQWGDFTSGPRIINEETKKEMRRILADIQSGAFAKSWILENQANRPMF 301
           G+ +MRYSISDTAQWGD   GPRII EETKKEM+++L +IQ G FAK W+LEN+ NRP F
Sbjct: 242 GISWMRYSISDTAQWGDMNIGPRIITEETKKEMKKVLREIQEGTFAKEWLLENEVNRPKF 301

Query: 302 NAINRRELEHPIEVVGRKLRSMMPFIKAKR 331
           NA+ + +  H IE+VG+KLR+MMP++K  +
Sbjct: 302 NALAKADENHEIEIVGKKLRAMMPWLKTAK 331


Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 414
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 331
Length adjustment: 28
Effective length of query: 316
Effective length of database: 303
Effective search space:    95748
Effective search space used:    95748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012282599.1 HM1_RS06880 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.11724.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11724.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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