Alignments for a candidate for carA in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 (characterized)
to candidate WP_012283166.1 HM1_RS09520 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::P25993
         (364 letters)



>NCBI__GCF_000019165.1:WP_012283166.1
          Length = 361

 Score =  399 bits (1025), Expect = e-116
 Identities = 193/356 (54%), Positives = 256/356 (71%), Gaps = 3/356 (0%)

Query: 2   KRRLVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGNY 61
           K  L+LE+G+V+EG+AFG+     GEVVFNTGMTGYQE+L+DPSYCGQIV +TYPLIGNY
Sbjct: 3   KGYLILEDGSVWEGQAFGARGQRPGEVVFNTGMTGYQELLTDPSYCGQIVVMTYPLIGNY 62

Query: 62  GINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIR 121
           GIN +DFES  PF++G I++E  E+PSNWRS  T++ YLK   + GL G+DTR LTR +R
Sbjct: 63  GINEEDFESRQPFLRGFIVREWAEIPSNWRSRDTINGYLKQAGVIGLAGVDTRALTRRLR 122

Query: 122 TAGALKGTFASSDEDIEAVLKRLNETELPRNQ--VSQVSAKTAYPSPGRGKRIVLVDFGM 179
           + G ++G  A+ D D  A++++  +      Q  V +V+ K        G  + L+D+G 
Sbjct: 123 SHGTMRGIIATGDVDRVALVQQAQQAPHISGQPLVDEVTVKERSVMENDGFHVALLDYGA 182

Query: 180 KHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVLGK 239
           K  I R L+ R C V ++P   TA EVL L PDGIMLSNGPGDP+DVP A+E +K +LGK
Sbjct: 183 KDNIARSLHLRGCKVTILPARTTAAEVLALNPDGIMLSNGPGDPRDVPYAVEAVKALLGK 242

Query: 240 VPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVSSIS-K 298
            P+FGICLGHQ+  LA GA   K+ FGHRGSNHPVK+LATG+V +TSQNHG+ +   S  
Sbjct: 243 KPVFGICLGHQIIGLAVGAKAYKLPFGHRGSNHPVKDLATGRVYITSQNHGFVIDGDSVP 302

Query: 299 TELEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMIETTE 354
             + V+HI +ND ++EGL    +PAF+VQYHPEA PGP+D+ +LFDRFI++++ TE
Sbjct: 303 AGVIVSHINMNDGSVEGLAFTDMPAFSVQYHPEACPGPDDSGYLFDRFIDLMKQTE 358


Lambda     K      H
   0.317    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 409
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 361
Length adjustment: 29
Effective length of query: 335
Effective length of database: 332
Effective search space:   111220
Effective search space used:   111220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_012283166.1 HM1_RS09520 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.27001.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27001.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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