Alignments for a candidate for ilvE in Heliomicrobium modesticaldum Ice1; ATCC 51547

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate WP_012283532.1 HM1_RS11370 branched-chain amino acid aminotransferase

Query= SwissProt::P39576
         (363 letters)



>NCBI__GCF_000019165.1:WP_012283532.1
          Length = 355

 Score =  434 bits (1116), Expect = e-126
 Identities = 201/351 (57%), Positives = 274/351 (78%)

Query: 6   IRVELTSTKKPKPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYH 65
           +++ L   +K KP  ++L FG +FTDHMFVMDY+ ++GW++ +I+PY PL ++P+ MV+H
Sbjct: 5   LQINLAQARKEKPAADKLGFGTIFTDHMFVMDYSVEQGWHNAQIMPYGPLLLEPSIMVFH 64

Query: 66  YGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDK 125
           YGQ VFEG+KA+ ++D+ V+LFRPE+ + R++ S  +LCIP  DE  V++ +K LV I++
Sbjct: 65  YGQAVFEGMKAFRTKDERVVLFRPERYIRRMSYSIQKLCIPAFDEAFVVDAIKTLVDIER 124

Query: 126 DWIPNAEGTSLYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGIKPVKIAVESEF 185
           DW+  AEGT+LYIRPFIIAT+P+LGV  S+TYK ++ILSPVG+YYKEG  PVKI +  EF
Sbjct: 125 DWVYGAEGTALYIRPFIIATDPYLGVRPSNTYKFMVILSPVGAYYKEGFNPVKIYITDEF 184

Query: 186 VRAVKGGTGNAKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKING 245
            RA K G G+ KT  NYA+SL A + A++ GF+QVLWLD IEKKYIEEVG+MN+FFKI+G
Sbjct: 185 TRAAKQGLGDVKTPANYAASLYAGEQAKKMGFTQVLWLDPIEKKYIEEVGTMNVFFKIDG 244

Query: 246 EIVTPMLNGSILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAA 305
           E+VTP L+GSIL G+TR+SV+ +LK WG+ VSER I++DE+  A+ +G LEE FGTGTAA
Sbjct: 245 EVVTPALSGSILSGVTRDSVLQVLKSWGIAVSERAISVDEIFAAYDEGRLEEVFGTGTAA 304

Query: 306 VISPVGELIWQDETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356
           VISPVG L   +  +SIN G TGE++ +L+D ITG+Q G  +D+FGW  EV
Sbjct: 305 VISPVGLLRHGEREISINGGVTGELSARLFDAITGMQYGKCSDDFGWIVEV 355


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 432
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 355
Length adjustment: 29
Effective length of query: 334
Effective length of database: 326
Effective search space:   108884
Effective search space used:   108884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_012283532.1 HM1_RS11370 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.10711.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10711.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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