Align glutamyl-tRNAGln amidotransferase subunit C (EC 6.3.5.7) (characterized)
to candidate WP_012284008.1 HM1_RS13780 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
Query= metacyc::MONOMER-13957
(96 letters)
>NCBI__GCF_000019165.1:WP_012284008.1
Length = 94
Score = 79.7 bits (195), Expect = 7e-21
Identities = 36/88 (40%), Positives = 60/88 (68%)
Query: 8 EVKHVAHLARLAITEEEAKMFTEQLDSIISFAEELNEVNTDNVEPTTHVLKMKNVMREDE 67
EV++VA LARL ++E + + +T QL++I+ +A+ L ++T +V PT HV + NVMR+D
Sbjct: 7 EVEYVAMLARLELSEADLERYTTQLNAILDYAQRLQGLDTKDVPPTAHVFPLHNVMRDDR 66
Query: 68 AGKGLPVEDVMKNAPDHKDGYIRVPSIL 95
+ E ++ NAP+ +DG+ RVP I+
Sbjct: 67 IDPSMERERIVANAPEEEDGFFRVPRIV 94
Lambda K H
0.312 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 94
Length adjustment: 10
Effective length of query: 86
Effective length of database: 84
Effective search space: 7224
Effective search space used: 7224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 39 (19.6 bits)
Align candidate WP_012284008.1 HM1_RS13780 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC)
to HMM TIGR00135 (gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.7122.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7122.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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