Alignments for a candidate for dapA in Methylobacterium sp. 4-46 Apr-46

Align 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 (characterized)
to candidate WP_012330674.1 M446_RS03430 4-hydroxy-tetrahydrodipicolinate synthase

Query= SwissProt::Q07607
         (292 letters)



>NCBI__GCF_000019365.1:WP_012330674.1
          Length = 300

 Score =  378 bits (970), Expect = e-109
 Identities = 187/287 (65%), Positives = 226/287 (78%), Gaps = 1/287 (0%)

Query: 4   GSITALVTPFADDRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITI 63
           GS+TALVTPF D   DE A    V WQIE G+ GLVP GTTGESPTLS +EH++VVE  I
Sbjct: 12  GSLTALVTPFRDGAFDEAAFRRFVAWQIEHGTHGLVPVGTTGESPTLSHAEHDRVVEACI 71

Query: 64  KTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDA 123
             A GRVPV+AGAGSNSTAEAI   RHA+ AGAD VLIV+PYYNKPTQEG+YQHFKA++ 
Sbjct: 72  DEAGGRVPVVAGAGSNSTAEAIERARHAEKAGADAVLIVTPYYNKPTQEGLYQHFKAVND 131

Query: 124 ASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVKDATGNLLRPSLERMACGEDFNL 183
           A  IPI++YNIP RS I++ V+T+ R++E   N+ GVKDAT N+ R SL+R A GEDF  
Sbjct: 132 AIGIPILIYNIPARSVIDMSVDTMRRLYE-LRNIAGVKDATANVARVSLQRQAMGEDFIQ 190

Query: 184 LTGEDGTALGYMAHGGHGCISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHRAL 243
           L+GED TALG+MAHGGHGCISVT+NVAP LCADFQ+ACL G++ AAL+LQDRLMPLH  L
Sbjct: 191 LSGEDATALGFMAHGGHGCISVTSNVAPRLCADFQEACLAGEYRAALRLQDRLMPLHTNL 250

Query: 244 FLETNPAGAKYALQRLGRMRGDLRLPLVTISPSFQEEIDDAMRHAGI 290
           F+ETNP+ AKYAL RLG M  ++RLPLV +  + +  +D A+R AG+
Sbjct: 251 FVETNPSPAKYALARLGLMDEEVRLPLVPLGEAGRRAVDGALRDAGL 297


Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 371
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 300
Length adjustment: 26
Effective length of query: 266
Effective length of database: 274
Effective search space:    72884
Effective search space used:    72884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012330674.1 M446_RS03430 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.20745.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20745.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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