Alignments for a candidate for thrC in Methylobacterium sp. 4-46 Apr-46

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_012332209.1 M446_RS11150 threonine synthase

Query= BRENDA::Q8YFS0
         (463 letters)



>NCBI__GCF_000019365.1:WP_012332209.1
          Length = 471

 Score =  560 bits (1444), Expect = e-164
 Identities = 289/464 (62%), Positives = 338/464 (72%), Gaps = 2/464 (0%)

Query: 1   MKYVSTRGEAPVLGFSDALLAGLARDGGLYLPQEYPQFTAEQIRALRGKSYVEVALAVLT 60
           M +VSTRG AP L F+DALLAGLARDGGLYLP+ +P    E I  L GK Y E A AVL 
Sbjct: 1   MLHVSTRGAAPPLTFTDALLAGLARDGGLYLPESWPSLAPETIAGLAGKPYAEAAKAVLA 60

Query: 61  PFTGGEIPAADFERMVREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLLA 120
           P   GEIP A  +RM+  AY  FRH AVCPLVQ DAN F+LEL HGPTLAFKDVAMQLL 
Sbjct: 61  PLVDGEIPRAALDRMIEAAYAGFRHPAVCPLVQLDANLFLLELHHGPTLAFKDVAMQLLG 120

Query: 121 RMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSS 180
           R+MD+VL  RG RATIVGATSGDTG AA+EAF G D  D+FILFP+GRVS VQ+RQMTS 
Sbjct: 121 RLMDHVLKARGSRATIVGATSGDTGSAAVEAFRGLDQVDVFILFPHGRVSEVQRRQMTSV 180

Query: 181 GFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARIMPQVVYYFTAALS 240
              NVHAL++EG FDDCQ +VK +F    F + + LSGVNSINWAR+  Q  YYFT+A++
Sbjct: 181 DSPNVHALAVEGTFDDCQAIVKALFQHPRFAEEVRLSGVNSINWARVAAQATYYFTSAVA 240

Query: 241 LGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIATNDNDILSRTLESGAYEMRGV 300
           LGAP R VSF VPTGNFGDI AG+VAKRMGLP+ +L+I TN NDIL+RTL +G YE+RGV
Sbjct: 241 LGAPHRPVSFAVPTGNFGDILAGWVAKRMGLPVGRLMIGTNANDILARTLATGTYEVRGV 300

Query: 301 AQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSA 360
           A TTSPSMDIQ+SSNFERLLFEA GR+   +  LM GLKQSG FT+  + L  +RSEF A
Sbjct: 301 APTTSPSMDIQVSSNFERLLFEALGREPEGLTRLMAGLKQSGRFTLPPEVLKRVRSEFDA 360

Query: 361 GRSTVDETAATIESVLSKDGYLLDPHSAIGVKVARE--KASGTAPMVVLATAHPAKFPDA 418
                 E AA I    ++ G +LDPHSAIGV+  R   +A    P+V LATAH AKFPDA
Sbjct: 361 AAVPEPEVAAEIRDTYARTGQILDPHSAIGVRAGRRLLEADPATPVVALATAHAAKFPDA 420

Query: 419 VKAACGVEPQLPAWLCDLMQRKESFTVLHNELKIVEEYVRHHSR 462
           V+AA G+ P LP  L DLM R E F+V+ N+   VE  +R  +R
Sbjct: 421 VEAATGIRPALPPHLADLMTRPERFSVVANDEGAVERVIRERAR 464


Lambda     K      H
   0.320    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 579
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 471
Length adjustment: 33
Effective length of query: 430
Effective length of database: 438
Effective search space:   188340
Effective search space used:   188340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_012332209.1 M446_RS11150 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.8322.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8322.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.