Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_012332991.1 M446_RS15255 aspartate-semialdehyde dehydrogenase
Query= SwissProt::P23247 (337 letters) >NCBI__GCF_000019365.1:WP_012332991.1 Length = 344 Score = 324 bits (831), Expect = 2e-93 Identities = 167/331 (50%), Positives = 224/331 (67%), Gaps = 3/331 (0%) Query: 5 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW 64 + VA+ GATG VG ML++L ER FP D + LAS RS G+ F +T++VQ ++++D+ Sbjct: 3 YKVAVVGATGNVGREMLDILAERAFPADTVVALASRRSLGQEVSFGDRTLKVQALDQYDF 62 Query: 65 SQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNR 124 S I L SAGGE S +W+P G VVIDN+S FRYD D+PL+VPEVN +A+ F + Sbjct: 63 SDTDICLMSAGGETSKEWSPRIGAQGCVVIDNSSAFRYDSDVPLIVPEVNADAVVGFSKK 122 Query: 125 NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYP 184 NIIANPNCST Q++VALKP++DA I+R+ V TYQSVSGAGK +DEL QT + Sbjct: 123 NIIANPNCSTAQLVVALKPLHDAATIKRVVVATYQSVSGAGKDAMDELFNQTRAVFTAGE 182 Query: 185 AETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYG 244 + F+++IAFN IP ID FM++G TKEE KMV ET+K+ DP I + TCVRVPVF G Sbjct: 183 VKVQKFTKRIAFNVIPHIDVFMEDGSTKEEWKMVAETKKML-DPKIKLTATCVRVPVFIG 241 Query: 245 HAEAVHVETRAPIDAEQVMDMLEQTDG--IELFRGADFPTQVRDAGGKDHVLVGRVRNDI 302 H+EAV+VE PI AE+ ++L G ++ R +A G+D V R+R DI Sbjct: 242 HSEAVNVEFERPISAEEAREILRSAPGVLVDDKREPGGYITPHEAAGEDATYVSRIREDI 301 Query: 303 SHHSGINLWVVADNVRKGAATNAVQIAELLV 333 + +G++ W V+DN+RKGAA N VQIAE+L+ Sbjct: 302 TVENGLSFWCVSDNLRKGAALNTVQIAEVLI 332 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 317 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 337 Length of database: 344 Length adjustment: 28 Effective length of query: 309 Effective length of database: 316 Effective search space: 97644 Effective search space used: 97644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_012332991.1 M446_RS15255 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.21113.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21113.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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