Alignments for a candidate for ilvC in Methylobacterium sp. 4-46 Apr-46

Align Ketol-acid reductoisomerase (NADP(+)); KARI; Acetohydroxy-acid isomeroreductase; AHIR; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; EC 1.1.1.86 (characterized)
to candidate WP_012333204.1 M446_RS16290 ketol-acid reductoisomerase

Query= SwissProt::Q9HVA2
         (338 letters)



>NCBI__GCF_000019365.1:WP_012333204.1
          Length = 339

 Score =  468 bits (1203), Expect = e-136
 Identities = 223/339 (65%), Positives = 270/339 (79%), Gaps = 1/339 (0%)

Query: 1   MRVFYDKDCDLSIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAH 59
           MRV+YD+D D+++I+GKKV I+GYGSQGHAHA NL+DSGV D+ + LR GSA+  KAEA 
Sbjct: 1   MRVYYDRDADINLIKGKKVVIVGYGSQGHAHALNLRDSGVKDIVIALRKGSASAKKAEAE 60

Query: 60  GLKVADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVPR 119
           G KV +V  A A ADVVM+LTPDE QG +Y+E +   +K+GA L FAHG ++H+N + PR
Sbjct: 61  GFKVMEVAEAAAQADVVMMLTPDELQGDIYRESLHGQMKQGAALLFAHGLNVHFNLIEPR 120

Query: 120 ADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGII 179
            DLDV+M+APK PGHTVRSE+++GGG+P LIAI QDASGNA ++ LSYA   GGGR GII
Sbjct: 121 KDLDVLMVAPKGPGHTVRSEYLRGGGVPTLIAIAQDASGNAHDLGLSYASANGGGRAGII 180

Query: 180 ETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMY 239
           ETTFK+E ETDLFGEQ VLCGG VEL+KAGFETLVEAGYAPEMAYFECLHE+KLIVDL+Y
Sbjct: 181 ETTFKEECETDLFGEQVVLCGGLVELIKAGFETLVEAGYAPEMAYFECLHEVKLIVDLIY 240

Query: 240 EGGIANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYP 299
           EGGIANMNYSISN AEYGEYVTGP +I  E++A M+  L  IQ G + + ++ E   N  
Sbjct: 241 EGGIANMNYSISNTAEYGEYVTGPRIITPETKAEMKRVLTDIQSGTFTRNWMLENKVNQT 300

Query: 300 SMTAYRRNNAAHPIEQIGEKLRAMMPWIAANKIVDKSKN 338
           S  A R  NAAHPIE++GE+LR MMPWI    +VDK+KN
Sbjct: 301 SFKATRARNAAHPIEEVGERLRGMMPWIKEKALVDKTKN 339


Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 406
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 339
Length adjustment: 28
Effective length of query: 310
Effective length of database: 311
Effective search space:    96410
Effective search space used:    96410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_012333204.1 M446_RS16290 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.22245.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22245.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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