Alignments for a candidate for asp-kinase in Methylobacterium sp. 4-46 Apr-46

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_012334463.1 M446_RS22805 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000019365.1:WP_012334463.1
          Length = 411

 Score =  400 bits (1028), Expect = e-116
 Identities = 216/410 (52%), Positives = 287/410 (70%), Gaps = 7/410 (1%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           M  +V KFGGTSV +++RI  VA  V +   AG ++ VV+SAM+G+TN L+   K  +  
Sbjct: 1   MPRLVMKFGGTSVATVDRIRNVARHVAREVRAGYEVAVVVSAMAGKTNELVAWCKDASPL 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
               E D +V++GEQVT  LL + L + G+PA S+ G Q+ I T   H  ARI +ID  +
Sbjct: 61  YPQSEYDAVVASGEQVTSGLLAIVLAQMGIPARSWQGWQIPIETSDQHGSARIARIDGAR 120

Query: 121 IRADLKEGRVVVVAGFQGVD-EHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVY 179
           + A  + G V V+AGFQG+  E G +TTLGRGGSDT+ VA+AAA+ A+ C IYTDVDGVY
Sbjct: 121 LDAGFRHGEVAVIAGFQGIHPESGRLTTLGRGGSDTSAVAVAAAIGAERCDIYTDVDGVY 180

Query: 180 TTDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKE----G 235
           TTDPRVVP+ARRLE++ FEEMLEMASLG+KVLQ+RSVE A  + VP  V  SF +     
Sbjct: 181 TTDPRVVPKARRLERVAFEEMLEMASLGAKVLQVRSVELAMVHRVPTTVRSSFDDPDDAR 240

Query: 236 PGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIV 295
           PGTLI  DE++ +EQ II+GIAF++DEA++T+R V D PG+A  I GP++ +NI VDMI+
Sbjct: 241 PGTLI-CDEDDIVEQQIITGIAFSKDEAQITLRRVKDKPGIAAAIFGPLADANINVDMII 299

Query: 296 QNVAHDN-TTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHA 354
           Q V+ D  TTD TFTV   +YE+A+++L+  A  I    + G T + K+S +GVGMRSHA
Sbjct: 300 QVVSGDGATTDMTFTVPAGDYERARAILDAQAGTIEFERIEGATDVVKISAIGVGMRSHA 359

Query: 355 GVASCMFEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
           GVA+  F ALA + INI+ I+TSEIK SV+++  Y ELAVR LH  + LD
Sbjct: 360 GVAAKAFRALADKGINIRAITTSEIKFSVLIDAAYTELAVRTLHALYGLD 409


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 415
Number of extensions: 14
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 411
Length adjustment: 31
Effective length of query: 380
Effective length of database: 380
Effective search space:   144400
Effective search space used:   144400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_012334463.1 M446_RS22805 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.14681.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14681.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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