Align phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (characterized)
to candidate WP_012335962.1 M446_RS30580 phosphoribosyl-AMP cyclohydrolase
Query= BRENDA::Q8YH95 (139 letters) >NCBI__GCF_000019365.1:WP_012335962.1 Length = 135 Score = 164 bits (415), Expect = 5e-46 Identities = 80/122 (65%), Positives = 91/122 (74%) Query: 1 MSIFPAQPSDKKAVEEGAAFMPRFDASGLITAIVTDARDGELLMVAHMNEEALRLTLETG 60 M++ A P D+ VEEGAAF PRF GLITA+ DA GE+LM+AHMN ++L TLETG Sbjct: 1 MALAFAPPGDRHQVEEGAAFTPRFGPDGLITALAVDAETGEVLMLAHMNRDSLARTLETG 60 Query: 61 IAHYWSRSRKTLWKKGETSGNLQSVVELRTDCDQDALWLKVHVAGDGPTCHTGRRSCFYR 120 A YWSRSR LW KG TSG +QSVVE+R DCDQDAL L+V V GDG CHTGRRSCFYR Sbjct: 61 EAWYWSRSRGELWHKGATSGQVQSVVEIRVDCDQDALLLRVRVGGDGGCCHTGRRSCFYR 120 Query: 121 QV 122 V Sbjct: 121 AV 122 Lambda K H 0.318 0.131 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 92 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 139 Length of database: 135 Length adjustment: 15 Effective length of query: 124 Effective length of database: 120 Effective search space: 14880 Effective search space used: 14880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)
Align candidate WP_012335962.1 M446_RS30580 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.535.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.535.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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