Alignments for a candidate for hisA in Methylobacterium sp. 4-46 Apr-46

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_012336410.1 M446_RS32890 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::Smeli:SMc02570
         (247 letters)



>NCBI__GCF_000019365.1:WP_012336410.1
          Length = 253

 Score =  325 bits (834), Expect = 4e-94
 Identities = 166/246 (67%), Positives = 192/246 (78%)

Query: 1   MILFPAIDLKDGQCVRLKLGDMEQATVYNPDPAAQARAFEEQGFEWLHVVDLNGAFAGET 60
           +ILFPAIDLK+G+CVRL  GDM QA V++ DPAAQA  F  QGF WLHVVDL+GAFAG  
Sbjct: 4   VILFPAIDLKEGRCVRLVQGDMAQAIVFSDDPAAQAATFAAQGFSWLHVVDLDGAFAGAP 63

Query: 61  VNGAAVDAILKATKNPVQLGGGIRTLEHIENWLSRGLKRVILGTVAVRDPALVIEACRKF 120
           +N AAVDAIL A   PVQLGGGIR +  +E WL +G+ RVI+GT AVRDPA V EA R+F
Sbjct: 64  MNAAAVDAILAAVAIPVQLGGGIREMRTVEGWLGKGVSRVIIGTAAVRDPAFVREAARRF 123

Query: 121 PGRVAVGIDAKGGKVAVEGWAEASELGVVELARKFEGAGVAAIIYTDIDRDGILTGINWA 180
           PG++AVGIDAK GKVAVEGWA+ S +   EL R+FE AGVAAIIYTDI RDG+L G+N  
Sbjct: 124 PGKIAVGIDAKDGKVAVEGWAKTSTVTADELGRRFEDAGVAAIIYTDIARDGVLKGLNIP 183

Query: 181 STLELADAVSIPVIASGGLASMDDIRRMTEPDAQKLEGAISGRALYDGRIDPKEALDLIR 240
            TL LA AVSIPVIASGGLAS+ DI R+ EPD   L GAI+GRALYDGRIDP+EAL  IR
Sbjct: 184 MTLALAQAVSIPVIASGGLASIADIHRLLEPDCALLAGAITGRALYDGRIDPREALAAIR 243

Query: 241 EARKGK 246
            A + +
Sbjct: 244 RAEQAR 249


Lambda     K      H
   0.319    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 282
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 253
Length adjustment: 24
Effective length of query: 223
Effective length of database: 229
Effective search space:    51067
Effective search space used:    51067
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_012336410.1 M446_RS32890 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.11186.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11186.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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