Alignments for a candidate for argE in Beijerinckia indica ATCC 9039

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_012384040.1 BIND_RS05275 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000019845.1:WP_012384040.1
          Length = 392

 Score =  234 bits (597), Expect = 3e-66
 Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 8/372 (2%)

Query: 5   EILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGY 64
           ++L  L+ F +     N  +V+ +  YL    +    +P  EGD++ +F +IGPK   G 
Sbjct: 16  DMLECLISFDTESSKSNLPLVAAVEDYLREQAVDYVKVPNAEGDKAALFISIGPKVDGGV 75

Query: 65  IISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRP 124
           ++SGH DVVP     WTSDPF LR EADR++GRGT DMKGF A  LA +P+     L RP
Sbjct: 76  VLSGHTDVVPVEGQSWTSDPFTLRREADRVFGRGTCDMKGFDALCLAMIPEFKQARLARP 135

Query: 125 LHLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGR 184
           +H+ LSYDEE  C G    IAR      +P   ++GEPT M+   AHK  A  R TV G 
Sbjct: 136 IHILLSYDEEIACTGSLDTIARFGHDLPRPAAVLVGEPTLMQVADAHKSVATYRTTVHGH 195

Query: 185 SGHSSRPDQGLNAIHGVAGVLTQAVAEADRLVG-GPFEHVFEPPYSSLQIGTVKGGQAVN 243
             HSS+P  G +A+     ++T+    A+ L   G     F+PP S++ +GT+ GG A N
Sbjct: 196 EAHSSKPYLGASAVEAGCDLVTELYRFAEVLAAEGDPSGRFDPPASTIHVGTIHGGTARN 255

Query: 244 IIPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGF-------EVEWQELSAYPALS 296
           I+   C   +E R + GV     L  +   A  +             +E       P L+
Sbjct: 256 ILAKECSFLWEFRGLPGVAQDRALRHLEDYAARVVLPKMTRYAPKASIETLVEVEVPGLA 315

Query: 297 LEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILID 356
            E  +   +L  +L        V + TEAG FQ+A +  I+CGPG I +AH+PDEYI I 
Sbjct: 316 PETGSQAESLALKLARSNRTITVPFATEAGQFQKAEVPTIVCGPGSIDQAHQPDEYIAIA 375

Query: 357 ELMACRAMVEAL 368
           ++ A  A +  L
Sbjct: 376 QIEAGIAFMRRL 387


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 374
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 392
Length adjustment: 30
Effective length of query: 344
Effective length of database: 362
Effective search space:   124528
Effective search space used:   124528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012384040.1 BIND_RS05275 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.16202.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16202.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.