Alignments for a candidate for argC in Beijerinckia indica ATCC 9039

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_012384377.1 BIND_RS07005 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Smeli:SMc01801
         (310 letters)



>NCBI__GCF_000019845.1:WP_012384377.1
          Length = 308

 Score =  292 bits (747), Expect = 8e-84
 Identities = 155/311 (49%), Positives = 206/311 (66%), Gaps = 12/311 (3%)

Query: 1   MKPKIFIDGEHGTTGLQIRVRMAGRTDLELLSIPEAERRNAAMREDLLNSADIAILCLPD 60
           M  ++FIDGE GTTGL I+ R+A R+D+EL+S+P  +R+N   +  +  S D+AILCLPD
Sbjct: 1   MPARLFIDGEAGTTGLGIKERLAERSDIELVSLPAEDRKNEEAKRAVYASVDLAILCLPD 60

Query: 61  DASREAVAMVA--GNNRVRIIDTSTAHRVAPDWAYGFAEMDKAQPQRIRDARHVANPGCY 118
           DA+REAVA+    G    R++D STAHR  P W YGF E+ + Q + I+ A  VANPGCY
Sbjct: 61  DAAREAVALTEDLGARAPRLLDASTAHRTTPGWTYGFPELTQGQAEAIKTAPRVANPGCY 120

Query: 119 PTGAIALIRPLRQAGILPDGYPVTVNAVSGYTGGGKQMIAQMEDDQNPDHIGAPHF-LYG 177
            TGAIAL+RPL +AG +P  +PV+++AVSGY+GGGK MIA  E         AP F  Y 
Sbjct: 121 ATGAIALLRPLVEAGFVPSDWPVSIHAVSGYSGGGKSMIAAYEAGT------APAFEAYA 174

Query: 178 LTLKHKHVPEMKMHGLLERAPVFSPSVGKFAQGMIVQVPLYLEDLAAGATLETIHRALVD 237
           L L HKHVPE+  +G L + P+F+PSVG F QGM+V +PL+L+ L     +E +      
Sbjct: 175 LGLGHKHVPEIMAYGRLAQRPIFTPSVGNFRQGMLVFIPLFLDALPRHPKIEDLSAVFAA 234

Query: 238 HYAGQSIVEVVPLDESAKLARIDATELAGSDAMKLFVFGTKGGAHVNLVALLDNLGKGAS 297
           HYAG + V V   D    L R++   L G++ ++LFV G +GG    L A LDNLGKGAS
Sbjct: 235 HYAGSTFVHVRQAD---GLERLEPQALNGTNELELFVCGPQGGHQAVLAARLDNLGKGAS 291

Query: 298 GAAVQNMDLML 308
           GAA+QN++LML
Sbjct: 292 GAALQNVELML 302


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 311
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 308
Length adjustment: 27
Effective length of query: 283
Effective length of database: 281
Effective search space:    79523
Effective search space used:    79523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012384377.1 BIND_RS07005 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.6011.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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