Alignments for a candidate for ilvE in Beijerinckia indica ATCC 9039

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_012386450.1 BIND_RS18020 branched-chain amino acid aminotransferase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000019845.1:WP_012386450.1
          Length = 295

 Score =  220 bits (560), Expect = 4e-62
 Identities = 112/263 (42%), Positives = 164/263 (62%), Gaps = 5/263 (1%)

Query: 6   RDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKRLLN 65
           RDG IWM+G+++ W DAK+HVL+H LHY   VFEG RAY+       IF+ +EH++R   
Sbjct: 9   RDGYIWMNGRIVAWADAKLHVLSHGLHYASCVFEGERAYEGR-----IFKSREHSERFRA 63

Query: 66  SAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVAIAA 125
           SA++   ++P+    L AA+  VV +N  ++CY+RP+ W GSE + V+A+ +TI+VAIAA
Sbjct: 64  SAQVLDFELPYSVAELDAAKQLVVDKNNFQNCYVRPVAWRGSEMMAVAAQNSTINVAIAA 123

Query: 126 WPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYDEAL 185
           W W +    +   KGIR+  + + R     +   AKA+G Y+   ++   A   GY +A+
Sbjct: 124 WDWPSMFDMETKMKGIRLDIADYRRPDPQTAPCHAKAAGLYMICTISKHRAERRGYADAM 183

Query: 186 LLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRITRD 245
           +LD  G V+E +G N F    G L+TP     L+GITR TVI LA+  G++V+E+RI  D
Sbjct: 184 MLDWQGRVAECTGANLFFTQKGALHTPIADCFLNGITRQTVIELAKRRGLEVVERRIMPD 243

Query: 246 EVYTCDEAFFTGTAAEVTPIREL 268
           E+   DE F  GT AEVTP+ E+
Sbjct: 244 ELSGFDECFVCGTGAEVTPVSEI 266


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 237
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 295
Length adjustment: 27
Effective length of query: 280
Effective length of database: 268
Effective search space:    75040
Effective search space used:    75040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012386450.1 BIND_RS18020 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.17245.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17245.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.