Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_012399612.1 BPHY_RS00950 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_000020045.1:WP_012399612.1
Length = 905
Score = 1066 bits (2757), Expect = 0.0
Identities = 564/904 (62%), Positives = 666/904 (73%), Gaps = 27/904 (2%)
Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400
RLSGLEP N+ +LF+NVGERTNVTGS F R+I ++ EAL VARQQVENGAQ+ID+
Sbjct: 7 RLSGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNNQFDEALAVARQQVENGAQVIDV 66
Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460
NMDE MLD++AAMVRF+NLIA EPDIARVPIMIDSSKWDVIE GLKC+QGK IVNSIS+K
Sbjct: 67 NMDEAMLDSKAAMVRFMNLIASEPDIARVPIMIDSSKWDVIEAGLKCVQGKAIVNSISLK 126
Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520
EG + F+HHAKL+RRYGAA VVMAFDEQGQADT ARK EIC+R+Y IL E GF PEDII
Sbjct: 127 EGKEQFVHHAKLIRRYGAASVVMAFDEQGQADTFARKTEICKRSYDILVNEAGFMPEDII 186
Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580
FDPNIFA+ATGIEEHNNYA DFI A IK+ LP+A +SGGVSNVSFSFRGNDPVREAIH
Sbjct: 187 FDPNIFAIATGIEEHNNYAVDFIEATRWIKQNLPYAKVSGGVSNVSFSFRGNDPVREAIH 246
Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640
VFLY+AI+ GMDMGIVNAGQL +Y DL AELR+ VEDV+LNRRDD T+RLLE+A+K+
Sbjct: 247 TVFLYHAIQAGMDMGIVNAGQLGVYADLDAELRERVEDVVLNRRDDATDRLLEIADKF-- 304
Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQ----ATRPIEVIEGP 696
KT + EWR+ V +RL ++LV GIT FI +DTEEAR + RPI VIEGP
Sbjct: 305 -KTGAAKKEENLEWRNQPVEQRLAHALVHGITNFIVEDTEEARAKIMDGGGRPINVIEGP 363
Query: 697 LMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK----EQG---KTNGKM 749
LMDGMN+VGDLFG+GKMFLPQVVKSARVMKQAVA+L PFIE K E G + GK+
Sbjct: 364 LMDGMNIVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRLLAEAGGDVRAKGKI 423
Query: 750 VIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITP 809
VIATVKGDVHDIGKNIV VVLQCNN+E+V++GVMVP +IL AK AD+IGLSGLITP
Sbjct: 424 VIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNEILAKAKVEGADIIGLSGLITP 483
Query: 810 SLDEMVNVAKEMERQGF----TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVG 865
SL+EM VA EM+R + IPLLIGGATTS+ HTAVKI NY GP VYV +ASR+V
Sbjct: 484 SLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPNYEGPVVYVPDASRSVS 543
Query: 866 VVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPV 925
V + LLSD ++ + +Y +R QH KK P VTL AR N DW AY P
Sbjct: 544 VASNLLSDEGAAKYLDELKSDYNRIRDQHANKK-ALPLVTLAEARANKTKIDWSAYQPVK 602
Query: 926 AHRLGVQEV-EASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDML 984
+G + + L NYIDW PFF TW LAG YP IL DE+VG A+R+F DA ML
Sbjct: 603 PKFIGRRVFRNFDLNELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDAKSML 662
Query: 985 DKLSAEKTLNPRGVVGLFPANRVG-DDIEIYRDETRTHVINVSHHLRQQTEKTGF----- 1038
+L + L GV+ L PAN V DDIEIY DE+R+ V ++RQQ+ +
Sbjct: 663 ARLIQGRWLTANGVIALLPANTVNDDDIEIYTDESRSEVALTWRNVRQQSVRPVVDGVMR 722
Query: 1039 ANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEA 1098
N LADF+APK SG ADYIG FAVT GL D FE HDDY+ IM+KALADR AEA
Sbjct: 723 PNRSLADFIAPKDSGVADYIGMFAVTAGLGVDTKEKQFEKDHDDYSAIMLKALADRFAEA 782
Query: 1099 FAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVE 1158
FAE +H RVR+ WGYA E LSN+ELI E Y+GIRPAPGYPACP+H K ++ +L+ +
Sbjct: 783 FAEAMHARVRRDLWGYAQGETLSNDELIGEKYRGIRPAPGYPACPDHLVKRDMFSVLQAD 842
Query: 1159 KHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWL 1218
+ GM +TES AM P ASVSG+Y +HPDS Y++V +I +DQ+EDYA+R +S+ + R L
Sbjct: 843 E-IGMSVTESLAMLPAASVSGFYLAHPDSTYFSVGKIGQDQLEDYAQRMSLSIADAARAL 901
Query: 1219 APNL 1222
AP L
Sbjct: 902 APLL 905
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2581
Number of extensions: 103
Number of successful extensions: 10
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 905
Length adjustment: 45
Effective length of query: 1182
Effective length of database: 860
Effective search space: 1016520
Effective search space used: 1016520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_012399613.1 BPHY_RS00955 homocysteine S-methyltransferase family protein
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_000020045.1:WP_012399613.1
Length = 356
Score = 404 bits (1039), Expect = e-117
Identities = 205/330 (62%), Positives = 256/330 (77%), Gaps = 6/330 (1%)
Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAI 67
L A L RIL+LDG MGTMIQ Y+L+EA +RGERF D+ D+KGNN+LL +++P VI+ I
Sbjct: 23 LPALLESRILILDGAMGTMIQRYKLDEAAYRGERFKDYARDIKGNNELLSITQPHVISEI 82
Query: 68 HNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPR 127
H Y AGADIIETNTF +TT+A ADY ME L+ E+N +AKLARA D+++ TP+KPR
Sbjct: 83 HEQYLAAGADIIETNTFGATTVAQADYGMEDLAVEMNRESAKLARAACDKYS--TPDKPR 140
Query: 128 YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTL 187
+VAG +GPT +TASISPDVNDP RN+TFD L AAY E KAL+EGGADL L+ET+FDTL
Sbjct: 141 FVAGAIGPTPKTASISPDVNDPGARNVTFDELRAAYYEQAKALMEGGADLFLVETIFDTL 200
Query: 188 NAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC 247
NAKAA+FA+ FE G LPIMISGT+TDASGR LSGQT EAF+NSLRHA+ LTFGLNC
Sbjct: 201 NAKAALFALDELFEDTGERLPIMISGTVTDASGRILSGQTVEAFWNSLRHAKPLTFGLNC 260
Query: 248 ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAF---GEYDLDADTMAKQIREWAQAGFL 304
ALG +R Y+ EL+++ + YV+ +PNAGLPN G +L ADT + ++E+AQAG +
Sbjct: 261 ALGAALMRPYIAELAKLCDTYVSCYPNAGLPNPMSDTGFDELPADT-SGLLKEFAQAGLV 319
Query: 305 NIVGGCCGTTPQHIAAMSRAVEGLAPRKLP 334
NI GGCCGTTP HIAA+++A+ + PRK P
Sbjct: 320 NIAGGCCGTTPDHIAAIAKALSEVKPRKWP 349
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1016
Number of extensions: 29
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 356
Length adjustment: 38
Effective length of query: 1189
Effective length of database: 318
Effective search space: 378102
Effective search space used: 378102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate WP_012399612.1 BPHY_RS00950 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.7619.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7619.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.