Alignments for a candidate for cysK in Paraburkholderia phymatum STM815

Align S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) (characterized)
to candidate WP_012400163.1 BPHY_RS03805 cysteine synthase CysM

Query= BRENDA::P29848
         (303 letters)



>NCBI__GCF_000020045.1:WP_012400163.1
          Length = 300

 Score =  360 bits (924), Expect = e-104
 Identities = 183/294 (62%), Positives = 221/294 (75%), Gaps = 4/294 (1%)

Query: 3   TLEQTIGNTPLVKLQRLGPDN----GSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEI 58
           T+E TIGNTPL++L R+  ++     + +  KLEGNNPAGSVKDR ALSMI +AE RG I
Sbjct: 5   TIEDTIGNTPLIQLVRVVDEDIRARNNVVLGKLEGNNPAGSVKDRPALSMIKQAELRGRI 64

Query: 59  KPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 118
           KPGD LIEATSGNTGIALAM AA++GY+M L+MP+++S ERR +M AYGA+++L     G
Sbjct: 65  KPGDTLIEATSGNTGIALAMAAAIRGYKMILIMPEDLSLERRQSMAAYGAQIVLTPVTGG 124

Query: 119 MEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGT 178
           ME ARDLA  M   G+G +LDQF NPDNP AHY  TGPEIWR T GRITHFVS+MGTTGT
Sbjct: 125 MEYARDLAEQMQREGKGIILDQFGNPDNPLAHYEATGPEIWRDTEGRITHFVSAMGTTGT 184

Query: 179 ITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAE 238
           I GVS++L+E +  + IVG QPEEGS IPGIR+WP  Y+P IF+ S VD V ++ Q  +E
Sbjct: 185 IMGVSQYLKELKPSIEIVGAQPEEGSRIPGIRKWPEAYLPKIFDRSRVDRVENVSQAASE 244

Query: 239 NTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVF 292
              R LA  EG+FCG+SS GA   ALRVAR    A +V I+CDRGDRYLSTGVF
Sbjct: 245 AMARRLASVEGVFCGISSAGACEVALRVARQVENATIVFIVCDRGDRYLSTGVF 298


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 324
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 300
Length adjustment: 27
Effective length of query: 276
Effective length of database: 273
Effective search space:    75348
Effective search space used:    75348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_012400163.1 BPHY_RS03805 (cysteine synthase CysM)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.2439.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2439.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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