Alignments for a candidate for serB in Paraburkholderia phymatum STM815

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_012400384.1 BPHY_RS04955 phosphoserine phosphatase SerB

Query= SwissProt::Q12A06
         (236 letters)



>NCBI__GCF_000020045.1:WP_012400384.1
          Length = 279

 Score =  248 bits (632), Expect = 1e-70
 Identities = 127/215 (59%), Positives = 162/215 (75%), Gaps = 4/215 (1%)

Query: 20  KLSDFKLIAFDMDSTLINIECVDEIADAAGRKAEVAAITEAAMRGEISDYKESLRQRVAL 79
           +L+DF L+A DMDSTLI IECVDEIAD  G KAEVAAITEA+MRGEI D+ ESL +RVAL
Sbjct: 68  RLTDFGLVAMDMDSTLITIECVDEIADFCGLKAEVAAITEASMRGEIKDFNESLTRRVAL 127

Query: 80  LKGVSVASMDEVYRTRLRLNPGAARLVQACKDAGLKVLLVSGGFTFFTDRIRDELGIDYT 139
           LKG+  +++++VY  RL+L+PGA +++   K AG+K LLVSGGFTFFT++++  LG+D+ 
Sbjct: 128 LKGLDASALEKVYEERLQLSPGAEQMLAGAKAAGMKTLLVSGGFTFFTEKLQTRLGLDFA 187

Query: 140 RSNVLETTDGLLTGRMVDQPWGDICDGEEKRKMLLETCGQLGISPRQAIAMGDGANDLPM 199
           R+N LE  DG LTGR++    G+I + + K + L E C +LG  P +AIAMGDG+NDL M
Sbjct: 188 RANTLEIVDGKLTGRVL----GEIVNADVKARTLREACDKLGFEPARAIAMGDGSNDLKM 243

Query: 200 MGEAGLSVAYHAKPRVREQAMVAINEGGLDRLLEL 234
           M  AGLSVA+ AKP VRE A VA N  GLD LL L
Sbjct: 244 MAAAGLSVAFRAKPVVREAASVAFNHVGLDGLLRL 278


Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 210
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 279
Length adjustment: 24
Effective length of query: 212
Effective length of database: 255
Effective search space:    54060
Effective search space used:    54060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_012400384.1 BPHY_RS04955 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.10655.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10655.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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