Alignments for a candidate for argE in Paraburkholderia phymatum STM815

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_012400401.1 BPHY_RS05040 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000020045.1:WP_012400401.1
          Length = 419

 Score =  268 bits (686), Expect = 2e-76
 Identities = 147/369 (39%), Positives = 209/369 (56%), Gaps = 11/369 (2%)

Query: 9   KLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEAR---GYI 65
           +LV   +V   PN  ++  +R  L   GI   +     G  +N+FATI   +     G +
Sbjct: 34  RLVSMDTVSRNPNLGLIETVRDSLRERGIEATLTHDESGKWANLFATIPAHDGETQGGIV 93

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVP     W SDPF+  V  D+LYGRGT DMKGF+ A L  VP++    L +P+
Sbjct: 94  LSGHTDVVPVDGQKWDSDPFKPEVRGDKLYGRGTCDMKGFIGAALTLVPRMQQTKLAKPI 153

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           HLA S+DEE GC G P MIA L +   +P G I+GEPT MR I AHKG  A +  VRG +
Sbjct: 154 HLAFSFDEEVGCVGAPLMIADLMKRGIKPDGCIVGEPTSMRPIIAHKGINAYQCCVRGFA 213

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRLVG-GPFEHVFEPPYSSLQIGTVKGGQAVNI 244
            HSS   +GLNAI   A ++      AD+    GPF+ +++ P+++ Q  T+KGG A+N 
Sbjct: 214 AHSSLTPKGLNAIEYAARLICFIRDMADQFRDQGPFDQLYDVPFTTAQTSTIKGGNAINT 273

Query: 245 IPDSCEVEFEARAISGVDPAELLAPVRKTAEALTTLGFE-------VEWQELSAYPALSL 297
           +P  C  EFE R +  +DP  + A + + A        +       +E+ +++A P L  
Sbjct: 274 VPAECSFEFEFRNLPTLDPEPIFARIDQYARETLLPKMKREHEAAAIEFTKIAAAPGLDA 333

Query: 298 EPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEYILIDE 357
              A +  L+  LT  +    V+YGTEAGLF  AGI +I+CGPGDI +AHK +E++ +D+
Sbjct: 334 TEQAAITQLVRALTADQDKRKVAYGTEAGLFSLAGIPSIVCGPGDIQQAHKANEFVTLDQ 393

Query: 358 LMACRAMVE 366
           L  C   +E
Sbjct: 394 LAQCERFLE 402


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 381
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 419
Length adjustment: 31
Effective length of query: 343
Effective length of database: 388
Effective search space:   133084
Effective search space used:   133084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012400401.1 BPHY_RS05040 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.31446.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31446.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.