Alignments for a candidate for dapD in Paraburkholderia phymatum STM815

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate WP_012400745.1 BPHY_RS06845 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= SwissProt::P56220
         (274 letters)



>NCBI__GCF_000020045.1:WP_012400745.1
          Length = 275

 Score =  413 bits (1061), Expect = e-120
 Identities = 207/271 (76%), Positives = 230/271 (84%), Gaps = 1/271 (0%)

Query: 2   QQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKK 61
           QQLQ +I++A++ RAD++P       REAV   I  LD GALRVAEK DG WV +QWLKK
Sbjct: 3   QQLQQIIDNAWDNRADLSPKAAPADVREAVAHAIEQLDKGALRVAEKKDGDWVVNQWLKK 62

Query: 62  AVLLSFRINDNKVMD-GAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARN 120
           AVLLSFR+ DN  M  G  +++YDKVP KFA+Y    F   GFRVVPPA  R+G++IA+N
Sbjct: 63  AVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSYIAKN 122

Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180
            VLMPSY NIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANP IIED
Sbjct: 123 VVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 182

Query: 181 NCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240
           NCFIGARSEVVEGVIVEE SVISMGVYLGQST+IYDRETGE+ YGR+PAGSVVV+GNLPS
Sbjct: 183 NCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNLPS 242

Query: 241 KDGSYSLYCAVIVKKVDAKTRGKVGINELLR 271
           KDGS+SLYCAVIVKKVDAKTR KVG+NELLR
Sbjct: 243 KDGSHSLYCAVIVKKVDAKTRAKVGLNELLR 273


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 323
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 275
Length adjustment: 25
Effective length of query: 249
Effective length of database: 250
Effective search space:    62250
Effective search space used:    62250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_012400745.1 BPHY_RS06845 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.10319.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10319.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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