Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_012402226.1 BPHY_RS14650 N-acetyl-gamma-glutamyl-phosphate reductase
Query= reanno::Korea:Ga0059261_0351 (310 letters) >NCBI__GCF_000020045.1:WP_012402226.1 Length = 315 Score = 249 bits (636), Expect = 6e-71 Identities = 134/315 (42%), Positives = 186/315 (59%), Gaps = 9/315 (2%) Query: 1 MSVSVFIDGAAGTTGLEIRERLATRSDISLIGLDDAHRKDAGKRAEAINSADFVILCLPD 60 MS VF+DG GTTGL+I E L+ R+D+ ++ +++A RKD +R IN++D LCLPD Sbjct: 1 MSTKVFVDGQEGTTGLKIFEYLSQRADVEILRIEEAKRKDIDERRRLINASDVTFLCLPD 60 Query: 61 DAAREAVALIANDTTRVIDASTAHRVADGWTYGFAELEPAQAAAIAEARYVSNPGCWPTG 120 A+RE+ +L+ ND T +IDASTA R + W YG EL AQ + A+ V+ PGC + Sbjct: 61 VASRESASLVENDRTVLIDASTAFRTSADWAYGLPELTRAQRERLRTAKRVAVPGCHASA 120 Query: 121 FLALVRPLVRAGLIPPDWVLTAGGASGYSGGGKSMIAEFEDGSEP--TGFRAYGLDLEHK 178 F+ +RPLV AG++P D+ + +GYSGGGK MIA++E G P R Y L L HK Sbjct: 121 FVLAMRPLVEAGVVPADFAAHSYSITGYSGGGKKMIADYEAGGNPKLDSPRPYALGLTHK 180 Query: 179 HLPEMQKHARIDHAPIFQPAVARSYRGMLIEVPLPLQMLPRKPAPAQIEQVLADAYRDSP 238 HLPEM H + APIF P V Y+G+ + L + P ++ + A+ Y Sbjct: 181 HLPEMAAHTGLKSAPIFTPIVGSFYKGLAVTTYFTPSQLAKPTTPQDVQALFAEYYGGEQ 240 Query: 239 IVRVLPSD-----DVSLVRIEDDAGTDRLTIRVFGNAERGQARLVATLDNLGKGAGGAAV 293 VRV P + D ++ + T+R+ + VFGN ER VA LDNLGKGA GAA+ Sbjct: 241 FVRVAPYNADDNLDSGFFDVQANNDTNRVDLFVFGNEERFVT--VARLDNLGKGASGAAI 298 Query: 294 QNLNIMAGFDQTAGL 308 Q +N+ G D+ AGL Sbjct: 299 QCMNLAIGADEAAGL 313 Lambda K H 0.319 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 254 Number of extensions: 10 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 310 Length of database: 315 Length adjustment: 27 Effective length of query: 283 Effective length of database: 288 Effective search space: 81504 Effective search space used: 81504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 48 (23.1 bits)
Align candidate WP_012402226.1 BPHY_RS14650 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.1939.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1939.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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