Alignments for a candidate for ilvI in Paraburkholderia phymatum STM815

Align Acetolactate synthase isozyme 2 large subunit; AHAS-II; ALS-II; Acetohydroxy-acid synthase II large subunit; EC 2.2.1.6 (characterized)
to candidate WP_012404261.1 BPHY_RS25075 biosynthetic-type acetolactate synthase large subunit

Query= SwissProt::P0DP90
         (548 letters)



>NCBI__GCF_000020045.1:WP_012404261.1
          Length = 621

 Score =  429 bits (1104), Expect = e-124
 Identities = 249/574 (43%), Positives = 340/574 (59%), Gaps = 31/574 (5%)

Query: 1   MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEH----------LLCRHEQGA 50
           M+GA  ++  L  QGV+T+FGY GGAI+P YDA++     H          ++  +EQ A
Sbjct: 22  MSGADIILRVLSEQGVDTLFGYSGGAILPTYDAVFRFNEMHANDPQRQIRFVVPANEQAA 81

Query: 51  AMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQ 110
              A GYARA+GK GV + TSGPGATN +T +AD   DSIPVV I GQV    +GTDAFQ
Sbjct: 82  GFMAAGYARASGKVGVFMVTSGPGATNAVTPIADCNGDSIPVVLICGQVPRALVGTDAFQ 141

Query: 111 EVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASG---- 166
           E  V  +  AC K  FLV    +L + +  AF+VA +GRPGPV+VD+PKD+Q   G    
Sbjct: 142 EAPVFNIMSACAKQVFLVTDPTKLEQTLRTAFEVARTGRPGPVVVDVPKDVQNWMGTYQG 201

Query: 167 ----DLEPWFTTVENEVTFPHAEVEQARQ---MLAKAQKPMLYVGGGVGMAQAVPALREF 219
               +   +   +       H   ++  +   +L ++++P+LYVGGGV  A A   L +F
Sbjct: 202 HGTLEFRGYSDRLRRVAKGAHLGADKRAEFFALLGQSERPLLYVGGGVIAAGAAAELLQF 261

Query: 220 LAATKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTG 279
               ++P   TL GLGA+ A +   LGMLGMHGT  AN+AV++CD LIAVGARFDDRV G
Sbjct: 262 SERYRLPVVTTLMGLGAMPAKHELSLGMLGMHGTACANYAVEDCDFLIAVGARFDDRVAG 321

Query: 280 -KLNTFAPHAS-VIHMDIDPAEMNKLRQAHVALQGDL-NALLPALQQPLN---QYDWQQH 333
            + + FAP A  V H+DID AE+NK+++AH    GD  NAL   L+   +    +DW Q 
Sbjct: 322 GRPDAFAPRARHVAHIDIDEAEINKVKRAHWTHIGDAKNALASLLEFDASVQAPFDWIQE 381

Query: 334 CAQLRDEHSWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPEN 393
             +L+  +   +D  G AI   L++++LS+      +++T VGQHQMWAAQ      P +
Sbjct: 382 VRELKRTYGMNFDRNGPAIPPQLVIERLSEITDGRAIISTGVGQHQMWAAQFFEFVEPRS 441

Query: 394 FITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLL 453
           F+TS  +GTMGFGLPAA+GAQ ARP+  V+ I GDGS  MNV EL T     +P+K++LL
Sbjct: 442 FLTSGSMGTMGFGLPAAIGAQFARPDALVIDIDGDGSIRMNVGELETASTYGVPVKVLLL 501

Query: 454 DNQRLGMVRQWQQLFFQER--YSETTLTDNPDFLMLASAFGI-HGQHITRKDQVEAALDT 510
           +N   GM+RQWQ LF++ R   S+ TL    DF+M A A G      +     ++  L  
Sbjct: 502 NNVGDGMIRQWQHLFYEGRLFVSDKTL-HRKDFVMAARADGFAFASRVAEIGDLDGQLKA 560

Query: 511 MLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544
            L  DGP  L V ID   +V+P+V PG   + M+
Sbjct: 561 FLAFDGPAFLEVMIDPNADVYPMVGPGQGFANMI 594


Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 888
Number of extensions: 45
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 621
Length adjustment: 36
Effective length of query: 512
Effective length of database: 585
Effective search space:   299520
Effective search space used:   299520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_012404261.1 BPHY_RS25075 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.527.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.527.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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