Alignments for a candidate for argE in Paraburkholderia phymatum STM815

Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate WP_012405267.1 BPHY_RS30215 acetylornithine deacetylase

Query= BRENDA::Q92Y75
         (374 letters)



>NCBI__GCF_000020045.1:WP_012405267.1
          Length = 389

 Score =  298 bits (762), Expect = 2e-85
 Identities = 158/376 (42%), Positives = 219/376 (58%), Gaps = 18/376 (4%)

Query: 6   ILGKLVGFRSVVGLPNNDVVSWIRGYLESHGIAVDVLPGPEGDRSNIFATIGPKEARGYI 65
           +L +L+GF +V    N  ++ +IR YL   G+  D+       ++N+FATIGP E  G +
Sbjct: 9   LLERLIGFPTVSRDSNLAMIDFIRHYLGDLGVRSDLFYNAGRTKANLFATIGPDEGGGIV 68

Query: 66  ISGHMDVVPAAETGWTSDPFRLRVEADRLYGRGTTDMKGFLAAVLAAVPKLAAMPLRRPL 125
           +SGH DVVP     WT +PFRL     RLYGRGT DMKGF+A+ LAAVP   A  LR P+
Sbjct: 69  LSGHTDVVPVDGQPWTVEPFRLSETEGRLYGRGTADMKGFIASALAAVPTFVARDLRVPV 128

Query: 126 HLALSYDEEAGCRGVPHMIARLPELCRQPLGAIIGEPTGMRAIRAHKGKAAARLTVRGRS 185
           HLA SYDEE GC GV  M+A L +   +P   +IGEPT ++ +  HKGK A R  V+G  
Sbjct: 129 HLAFSYDEEVGCLGVRPMLAELAQRAHKPALCLIGEPTELKPVLGHKGKLAMRCQVKGAP 188

Query: 186 GHSSRPDQGLNAIHGVAGVLTQAVAEADRLVGGPFEH--VFEPPYSSLQIGTVKGGQAVN 243
            HS+    G+NAI   A ++ +     D+L   P  H   F+PPYS++Q G +KGG+A+N
Sbjct: 189 CHSAYAPNGVNAIQYAARLVNRLEEIGDQL-AAPERHDERFDPPYSTVQTGVIKGGRALN 247

Query: 244 IIPDSCEVEFEARAISGVDPAEL-----------LAPVRKTAEALTTLGFEVEWQELSAY 292
           I+P  CE +FE RA+ G D  E+           L P  +   A T    ++ +  LSAY
Sbjct: 248 IVPAECEFDFEVRALPGYDATEVADELQTFAQTCLLPKMRAVNAAT----DIRFASLSAY 303

Query: 293 PALSLEPDAPLAALLEELTGREALPAVSYGTEAGLFQRAGIDAIICGPGDIGRAHKPDEY 352
           P L+  PD+  A LL  L G      V++GTE GLF  AGI  ++CGPG + + HKPDE+
Sbjct: 304 PGLATPPDSDAARLLALLCGSNGFGTVAFGTEGGLFNEAGIPTVVCGPGSMDQGHKPDEF 363

Query: 353 ILIDELMACRAMVEAL 368
           + + ++  C A++  L
Sbjct: 364 VTVGQIAGCDALLARL 379


Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 400
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 389
Length adjustment: 30
Effective length of query: 344
Effective length of database: 359
Effective search space:   123496
Effective search space used:   123496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012405267.1 BPHY_RS30215 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.14901.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14901.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.