Alignments for a candidate for argC in Paraburkholderia phymatum STM815

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_012405871.1 BPHY_RS33295 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Smeli:SMc01801
         (310 letters)



>NCBI__GCF_000020045.1:WP_012405871.1
          Length = 309

 Score =  296 bits (758), Expect = 4e-85
 Identities = 156/309 (50%), Positives = 203/309 (65%), Gaps = 7/309 (2%)

Query: 3   PKIFIDGEHGTTGLQIRVRMAGRTDLELLSIPEAERRNAAMREDLLNSADIAILCLPDDA 62
           P +FIDG+ GTTGLQI  R+  RTDL LL++  AER+++  R + +N+ DIAILCLPD A
Sbjct: 4   PIVFIDGDQGTTGLQIHERLRNRTDLRLLTLAGAERKDSRRRAEAINACDIAILCLPDAA 63

Query: 63  SREAVAMVAGNNRVRIIDTSTAHRVAPDWAYGFAEMDKAQPQRIRDARHVANPGCYPTGA 122
           +REAV  +  N  VR+ID S+AHR  P W YGF EM + Q +RI +AR V NPGCYPTGA
Sbjct: 64  AREAVDAIV-NPAVRVIDASSAHRTRPGWTYGFPEMTRGQAERIANARRVTNPGCYPTGA 122

Query: 123 IALIRPLRQAGILPDGYPVTVNAVSGYTGGGKQMIAQMEDD--QNPDHIGAPHFLYGLTL 180
           I L+RPL +AG++PD YPV+++AVSGY+G G+  I + E +   NP      + +YGL L
Sbjct: 123 IGLLRPLMEAGLIPDNYPVSIHAVSGYSGRGRAGIEEHEGECAANP----PAYQVYGLEL 178

Query: 181 KHKHVPEMKMHGLLERAPVFSPSVGKFAQGMIVQVPLYLEDLAAGATLETIHRALVDHYA 240
            HKH PE++ H  L + P+F P+ G F QG+++ VPL L  LA       +H  L  HYA
Sbjct: 179 AHKHTPEIQQHAGLAQRPIFVPAYGAFRQGIVLTVPLALRLLAPDVDGARLHACLARHYA 238

Query: 241 GQSIVEVVPLDESAKLARIDATELAGSDAMKLFVFGTKGGAHVNLVALLDNLGKGASGAA 300
               V V PL ES  L  +D   L G++ M+L VF       V L A+ DNLGKGASGAA
Sbjct: 239 EADHVHVSPLHESGVLTHLDPRVLNGTNDMRLSVFSNIEHGQVLLSAVFDNLGKGASGAA 298

Query: 301 VQNMDLMLS 309
           VQN+DLML+
Sbjct: 299 VQNLDLMLA 307


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 313
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 309
Length adjustment: 27
Effective length of query: 283
Effective length of database: 282
Effective search space:    79806
Effective search space used:    79806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012405871.1 BPHY_RS33295 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.12761.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12761.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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