Alignments for a candidate for argC in Nostoc punctiforme ATCC 29133; PCC 73102

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_012409887.1 NPUN_RS17735 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>NCBI__GCF_000020025.1:WP_012409887.1
          Length = 352

 Score =  273 bits (697), Expect = 7e-78
 Identities = 143/347 (41%), Positives = 207/347 (59%), Gaps = 4/347 (1%)

Query: 45  IKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFS--E 102
           + VGI+G +GY  V+L+R+L  HPEV +  +   S  G    ++YP+L    +L     E
Sbjct: 7   VPVGIIGASGYGEVQLVRLLMDHPEVELVYLGGESSIGKSFGDLYPHLAHTANLPIEAVE 66

Query: 103 PDVNVLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHES 162
           P++ +   C++VF + P+G+A ++ P+L+  G +V+DLSAD+R  DL  + NWYG+    
Sbjct: 67  PEI-IAHRCEVVFLSLPNGLACQIAPKLLEKGCKVLDLSADYRFSDLTTYTNWYGIERSD 125

Query: 163 PEWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSG 222
              A  AVYGLPE+ RD I  AQL+  PG YPTA  L   PLL+QGL+ P+  I DAK+G
Sbjct: 126 RTIAATAVYGLPELYRDRIAEAQLIGCPGSYPTASLLALSPLLKQGLILPETAIIDAKAG 185

Query: 223 ASGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIPMIR 282
            S  GRQ +  +L  E   S  A+    HRH PEI Q     AG ++ + F PHL+PM+R
Sbjct: 186 TSSGGRQPQTNLLLSEADNSIAAFNIGRHRHTPEIEQICSDLAGHELMIQFTPHLVPMVR 245

Query: 283 GIEATLYAELKNPADF-DRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHR 341
           GI AT+YA++ +P    D L  +F   + + P+V V   G +P+T+   G+N C + +  
Sbjct: 246 GILATVYAKMSDPGLVRDDLITIFSAFYRNSPWVKVCGSGIYPQTKWANGSNLCYIGVEV 305

Query: 342 QEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
             ++  VIV S IDNL+KG AGQA+Q +N+M G  ET+GL      P
Sbjct: 306 DSRTGRVIVISAIDNLIKGQAGQAIQCLNLMMGWDETLGLPKLGFYP 352


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 416
Number of extensions: 18
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 352
Length adjustment: 30
Effective length of query: 358
Effective length of database: 322
Effective search space:   115276
Effective search space used:   115276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012409887.1 NPUN_RS17735 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.7751.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7751.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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