Alignments for a candidate for argB in Nostoc punctiforme ATCC 29133; PCC 73102

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_012412507.1 NPUN_RS31950 acetylglutamate kinase

Query= BRENDA::Q6V1L5
         (301 letters)



>NCBI__GCF_000020025.1:WP_012412507.1
          Length = 298

 Score =  433 bits (1114), Expect = e-126
 Identities = 216/291 (74%), Positives = 250/291 (85%)

Query: 3   SEFIEAGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGM 62
           SE+I    A RVR+LSEALPY+QQFAGRTVVVKYGGAAMK   LK+ V+RDIVFL+CVG+
Sbjct: 6   SEYIRQTEATRVRVLSEALPYIQQFAGRTVVVKYGGAAMKDSTLKDKVIRDIVFLSCVGL 65

Query: 63  RPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTG 122
           RP+VVHGGGPEIN+WL ++GIEPQF NGLRVTDA TM+VVEMVLVGRVNK+IV+ IN  G
Sbjct: 66  RPIVVHGGGPEINSWLDKLGIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVALINQAG 125

Query: 123 GRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQ 182
           G AVG CG DG L  ARP  QEGIGFVGEV++VN ++++ L   GYIPV+SSVAADE GQ
Sbjct: 126 GLAVGLCGKDGNLFTARPQGQEGIGFVGEVSNVNIKILDTLASNGYIPVVSSVAADETGQ 185

Query: 183 SFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVG 242
           ++NINADTVAGEIAAAL AEKLILLTDT GIL+D K   +LIP+++I ++RELI  GIV 
Sbjct: 186 AYNINADTVAGEIAAALGAEKLILLTDTSGILKDYKDQSTLIPKVDIREARELIVNGIVT 245

Query: 243 GGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
           GGMIPKV+CC+RSLAQGVRAAHIIDGRIPHALLLEIFTD GIGTMI+GS +
Sbjct: 246 GGMIPKVNCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILGSQF 296


Lambda     K      H
   0.320    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 398
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 298
Length adjustment: 27
Effective length of query: 274
Effective length of database: 271
Effective search space:    74254
Effective search space used:    74254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_012412507.1 NPUN_RS31950 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.9415.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9415.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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