Alignments for a candidate for gatA in Chlorobium limicola DSM 245

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_012465306.1 CLIM_RS01725 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000020465.1:WP_012465306.1
          Length = 474

 Score =  456 bits (1174), Expect = e-133
 Identities = 232/467 (49%), Positives = 320/467 (68%), Gaps = 3/467 (0%)

Query: 10  ELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSEHG 69
           +L+  +  + I    +V +  +RI    D    ++ +  E+A   A++LD+ +      G
Sbjct: 8   DLRSELISRRITCEKVVLDYLERIDRHRDD-NIYITVFHEQAVEKARKLDKKLSEGGLPG 66

Query: 70  LLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEFAM 129
            LFGMP+ +KDNI  KG   TC+S+ILEN++ +YDAT VQRL+  +AV +GK NMDEFAM
Sbjct: 67  KLFGMPMAIKDNISIKGAGLTCASRILENYESVYDATAVQRLEAEDAVFLGKTNMDEFAM 126

Query: 130 GSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGVV 189
           GSS ENSA+    NP++   VPGGSSGGSAAAVAAG    +LGSDTGGS+RQPA FC +V
Sbjct: 127 GSSNENSAFGAVPNPFDKTRVPGGSSGGSAAAVAAGLALAALGSDTGGSVRQPAGFCDIV 186

Query: 190 GLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPDFL 249
           GLKPTYGR+SRYGLVAFASS DQIG + R  +D + +L  ++G D+ D+TS++ DVPD+ 
Sbjct: 187 GLKPTYGRISRYGLVAFASSFDQIGVLARNCDDASLVLGIMAGKDEHDATSSHRDVPDYA 246

Query: 250 SSLTG-DIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYALAT 308
           + +    ++GLKI VPKEY  E + +E  E V A L  L   GA   +++LP S YA+A 
Sbjct: 247 ADMAAVRVEGLKIGVPKEYFHESLNREVGEIVRAKLHELRDKGAELVDITLPESDYAIAA 306

Query: 309 YYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFALSS 368
           YY+L ++EAS+NLARFDG RYGYR+  A++++ +Y  +R EGFG EVKRRIMLGT+ LS+
Sbjct: 307 YYILVTAEASSNLARFDGARYGYRSSRAEDVLAMYVNSRTEGFGKEVKRRIMLGTYVLSA 366

Query: 369 GYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYANDILT 428
           GYYD YYKKAQ+VR + +  + +  EK DVI GPT+P P F IGE   DPL MY  D+ T
Sbjct: 367 GYYDTYYKKAQQVRRVFQDRYREALEKVDVIAGPTSPFPPFSIGEKMDDPLEMYLADVFT 426

Query: 429 IPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQ 474
           +P ++ G+P +SVP G+ +  LP+G+ +I   F+E  +  +A   ++
Sbjct: 427 VPASIVGMPAVSVPVGMDSRNLPVGMHLICDFFEEGKLMGIARHLQR 473


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 596
Number of extensions: 26
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 474
Length adjustment: 34
Effective length of query: 451
Effective length of database: 440
Effective search space:   198440
Effective search space used:   198440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_012465306.1 CLIM_RS01725 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.21036.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21036.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.