Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_012465702.1 CLIM_RS03720 biosynthetic-type acetolactate synthase large subunit
Query= metacyc::MONOMER-18810
(585 letters)
>NCBI__GCF_000020465.1:WP_012465702.1
Length = 573
Score = 573 bits (1476), Expect = e-168
Identities = 285/561 (50%), Positives = 382/561 (68%), Gaps = 7/561 (1%)
Query: 21 GAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYARAT 80
G+EI L E V Y++GYPGGA+L +Y+ L+ +HILVRHEQ A H A+GYARAT
Sbjct: 10 GSEIFFECLRRENVAYIFGYPGGALLKVYETLYDIKDIKHILVRHEQGATHMAEGYARAT 69
Query: 81 GKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGITRPI 140
GK GV LVTSGPG TN VTGI AY+DS PMV+ TG VP+ IG DAFQE D VGITRPI
Sbjct: 70 GKPGVVLVTSGPGATNTVTGITNAYMDSSPMVIFTGQVPSSLIGNDAFQEADIVGITRPI 129
Query: 141 VKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRSYNP 200
KHNFLVKDVR+LA TI+KAF++A GRPGPV+VD+PKDV C +E+P+++++R + P
Sbjct: 130 TKHNFLVKDVRELALTIRKAFYLATNGRPGPVLVDMPKDVLNAVCTFEWPETVEIRGFKP 189
Query: 201 VNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTLMGLGAF 260
K H Q+ KA L+ +++P +Y GGGV+ +NAS+EL++LA PVT TL GLGAF
Sbjct: 190 TVKCHQNQVEKAAHLIARSKKPLLYIGGGVISSNASEELQRLAIEQNIPVTMTLQGLGAF 249
Query: 261 PGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKIIHIDID 320
PG +GMLGMHGT+ AN A+ NCD+LIA+GARFDDRV G F +QA K IH DID
Sbjct: 250 PGDHPLSMGMLGMHGTFWANQAVNNCDLLIAVGARFDDRVTGKTDTFATQAYK-IHNDID 308
Query: 321 PSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVDCLKYD 380
P+++ K VKVD+P+VG+ K L ++ ++ ++ ++W I W+ L Y
Sbjct: 309 PTNVDKNVKVDLPVVGDAKHFLAAIL-----KEMPEEKTDRSEWLADIRAWQKQCPLTYT 363
Query: 381 RSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGLGTMGVG 440
S+ +K +YV++++ T G+A + +DVGQHQMW +Q+Y+F +PR I SGGLGTMG G
Sbjct: 364 NESDSLKTEYVIDEVCRQTGGNAVVTTDVGQHQMWTSQYYRFRKPRSIITSGGLGTMGYG 423
Query: 441 LPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGMVRQWQE 500
LP A+G ++ VV G+G M +QEL T + Y PVKI LNN +LGMVRQWQE
Sbjct: 424 LPAAIGAAFGVTDRPVVLFCGDGGFMMNVQELVTAVYYKIPVKIFLLNNSFLGMVRQWQE 483
Query: 501 IEYDNRYSHSYM-DALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVFLDFQT 559
+ + +YS + + D+ PDFVK+AEA+G MR E + + A+ EA + VF++F+
Sbjct: 484 LFHQEKYSFTDLGDSNPDFVKVAEAFGCRAMRAENPDEAKKAISEALAWNEGPVFVEFKV 543
Query: 560 DPTENVWPMVQAGKGISEMLL 580
+ V+PMV AG IS+MLL
Sbjct: 544 IKKDMVFPMVPAGASISDMLL 564
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 946
Number of extensions: 37
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 573
Length adjustment: 36
Effective length of query: 549
Effective length of database: 537
Effective search space: 294813
Effective search space used: 294813
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Align candidate WP_012465702.1 CLIM_RS03720 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.25164.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25164.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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