Alignments for a candidate for asd in Chlorobium limicola DSM 245

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_012467024.1 CLIM_RS10710 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000020465.1:WP_012467024.1
          Length = 342

 Score =  312 bits (800), Expect = 7e-90
 Identities = 171/333 (51%), Positives = 222/333 (66%), Gaps = 8/333 (2%)

Query: 4   QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFD 63
           ++ VA+ GATG VG TM++VL+ER FPVDEL  LAS RS G+  RF G+           
Sbjct: 7   RYRVAVLGATGLVGRTMIQVLEERNFPVDELVPLASPRSAGQIVRFKGREFITAVPSGEI 66

Query: 64  WSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAI--AEF 121
           +  V IALFSAG   S +WAP+AA AG VVIDN+S FR +  IPLVVPEVNPEAI  A+ 
Sbjct: 67  FRNVDIALFSAGASASREWAPVAAAAGAVVIDNSSAFRMEPGIPLVVPEVNPEAIFKADG 126

Query: 122 RNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN 181
              +IIANPNCSTIQM+V LKP++D  G++R+ V+TYQSV+G GKAG D L  + A    
Sbjct: 127 TPESIIANPNCSTIQMVVVLKPLHDRYGVKRVVVSTYQSVTGKGKAGRDALESELA---- 182

Query: 182 GYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPV 241
           G   E  T   QIAFN +PQID F +NGYTKEEMKMV ET+KI  D ++ V+PT VR+PV
Sbjct: 183 GEEQEQFTHFHQIAFNAVPQIDTFTENGYTKEEMKMVNETRKIMGDEALAVSPTTVRIPV 242

Query: 242 FYGHAEAVHVETRAPIDAEQVMDMLEQTDGIEL--FRGADFPTQVRDAGGKDHVLVGRVR 299
           + GH E++++E     D +++  +L  + GI L     A        +  +D V  GR+R
Sbjct: 243 YGGHGESLNIELENEFDIDELRTLLASSPGILLQDDPSARIYPMPLTSYERDEVFAGRIR 302

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELL 332
            D  +   +N+W+VADN+RKGAATNAVQIAE++
Sbjct: 303 RDFWNPKTLNMWIVADNLRKGAATNAVQIAEVI 335


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 349
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 342
Length adjustment: 28
Effective length of query: 309
Effective length of database: 314
Effective search space:    97026
Effective search space used:    97026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_012467024.1 CLIM_RS10710 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.23855.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23855.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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