Alignments for a candidate for thrC in Chlorobium limicola DSM 245

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_012467222.1 CLIM_RS11720 threonine synthase

Query= BRENDA::P00934
         (428 letters)



>NCBI__GCF_000020465.1:WP_012467222.1
          Length = 437

 Score =  315 bits (806), Expect = 2e-90
 Identities = 175/409 (42%), Positives = 249/409 (60%), Gaps = 8/409 (1%)

Query: 1   MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60
           M  ++    +  VS  +A  +GL  + GL+ P ++P FS  E+  +    F   +  I  
Sbjct: 1   MIYFSTNKSSTPVSIKKATLEGLAPDGGLYVPSEIPVFSAPEMQLLEDGSFNNIAFAIAR 60

Query: 61  AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120
            FI  EIP + L + + + + F  P+  +E      ELF GPTLAFKD+G RF+A++  +
Sbjct: 61  KFICGEIPPDQLSDIIDSCYPFETPLVELEKGTFIEELFSGPTLAFKDYGARFLARLTGY 120

Query: 121 IAGD--KPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIE 178
            A +  K +T+L ATSGDTG+AVA+ F G+ N +VV+LYP GK+S LQE+   T GGN++
Sbjct: 121 FASEERKLITVLVATSGDTGSAVAYGFQGIQNTRVVLLYPSGKVSRLQEQQLTTAGGNVQ 180

Query: 179 TVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQL-PQET 237
            + + GDFD CQ LVKQAF D ELK  L L SANSINISRL+ Q  YY  A   L  Q  
Sbjct: 181 ALEVQGDFDDCQRLVKQAFTDPELKERLTLTSANSINISRLIPQSFYYAWATLHLKAQYG 240

Query: 238 RNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATL 297
             Q V SVPSGN+G+LTAG+LA+ +G P+  FIAA+N ND+V R+L +G++ P  T  TL
Sbjct: 241 LEQPVFSVPSGNYGNLTAGVLARMMGFPIGHFIAASNANDSVTRYLDEGRYDPHPTIPTL 300

Query: 298 SNAMDVSQPNNWPRVEELFRRKIWQL-KELGYAAVDDETTQQTMREL-KELGYTSEPHAA 355
           S AMDV  P+N+ R+   +      + K++   A+ D+ T  T+R++ +  GY  +PH A
Sbjct: 301 STAMDVGNPSNFARLRHFYGNDHHAMGKDITGIAISDDATVATIRDIFRRYGYVIDPHTA 360

Query: 356 VAYRAL---RDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELA 401
           V +RAL   R        G+ L TAHPAKF E +E  L + +++P+ L+
Sbjct: 361 VGFRALEEYRQTSGSRSPGIVLSTAHPAKFLEVIEDALEKEIEIPERLS 409


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 411
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 437
Length adjustment: 32
Effective length of query: 396
Effective length of database: 405
Effective search space:   160380
Effective search space used:   160380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_012467222.1 CLIM_RS11720 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.20153.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20153.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.