Alignments for a candidate for asp-kinase in Chlorobium limicola DSM 245

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_012467305.1 CLIM_RS12130 lysine-sensitive aspartokinase 3

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_000020465.1:WP_012467305.1
          Length = 471

 Score =  298 bits (764), Expect = 2e-85
 Identities = 188/477 (39%), Positives = 284/477 (59%), Gaps = 38/477 (7%)

Query: 4   VMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQ----QALDV 59
           VMKFGGTSVG+   ++    +V  R+K +   +VV+SA S +TN LV +++     ALD 
Sbjct: 3   VMKFGGTSVGNARAMQQAIDLVV-REKLNGAPLVVLSACSGITNKLVRLAEASGRSALD- 60

Query: 60  RDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 119
             +   G+    +R+ H     E I++ E++ E++  ++  +  LE +  GV  +GELT 
Sbjct: 61  EALLLAGE----VRQHHIDLTAELIQAPELQAELEAKVEEYVAGLEMLARGVDIVGELTE 116

Query: 120 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSAR----VKRLEVK 175
           +S+D   SFGE LS+ I + A+++ G  +  L+     +ITD+N G AR    + R    
Sbjct: 117 RSKDTFCSFGELLSTTIFAAAMKEQGHDAEWLDVRRV-MITDDNHGFARPLGDICRENAG 175

Query: 176 ERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGV 235
             + PLL  G I +  G+IG    G  TTLGRGGSDYSAAL+G  L+A+ I+IWTDV GV
Sbjct: 176 AIISPLLDAGTIVITQGYIGAALNGRTTTLGRGGSDYSAALLGAWLNANAIQIWTDVDGV 235

Query: 236 YTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEG 295
            T DPRLVP AR I  +++ EA ELAY GAKVLHP TI PA+EK IP+ V NT+ P+++G
Sbjct: 236 MTCDPRLVPEARSIRIMTFSEAAELAYLGAKVLHPDTIAPAVEKNIPVWVLNTWHPDAKG 295

Query: 296 TLITNDME----MS-DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVI 350
           TLIT+D E    MS   +VK+I+  K   +IN+    M+G  G  A +F A     V++ 
Sbjct: 296 TLITDDTERLSGMSYGGLVKSIAVKKGQCIINVRSNRMLGRYGFMAELFGAFSRYGVSIE 355

Query: 351 LISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVV 410
           +IS  SSE ++S+ V +                F ++   +  ++  V ++  V  +SVV
Sbjct: 356 MIS--SSEVSVSVTVDDT--------------CFSEELLQDLRVLGQVDIEHRVATVSVV 399

Query: 411 GAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 467
           G  +R +KG+AG+IF+++ +   N++MI+QG+SE+N+ FV++E D+   V  LH +F
Sbjct: 400 GDNLRMSKGVAGRIFSSLRD--VNLRMISQGASEINVGFVVEENDVERAVNTLHHEF 454


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 502
Number of extensions: 24
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 471
Length adjustment: 33
Effective length of query: 440
Effective length of database: 438
Effective search space:   192720
Effective search space used:   192720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_012467305.1 CLIM_RS12130 (lysine-sensitive aspartokinase 3)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.5702.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5702.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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