Alignments for a candidate for proC in Trichlorobacter lovleyi SZ

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_012471124.1 GLOV_RS15275 pyrroline-5-carboxylate reductase

Query= SwissProt::Q9HH99
         (270 letters)



>NCBI__GCF_000020385.1:WP_012471124.1
          Length = 273

 Score =  222 bits (565), Expect = 8e-63
 Identities = 117/265 (44%), Positives = 170/265 (64%), Gaps = 1/265 (0%)

Query: 3   NQKIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVIV 62
           N  +GFIG G M  A+++G I  G+  P NI  SD  +     L + L +R + +N+ + 
Sbjct: 4   NSTVGFIGGGNMAEAIIKGLISGGMA-PRNIIVSDPVQDRRALLASTLSVRTTDENSEVA 62

Query: 63  RESDILILAVKPQTLSSVLSNLKNEITSEKLVISIAAGVPLSTYEDALLEGTRVVRVMPN 122
           +++++++L++KPQ  +SVL+ L+N IT+++LV+SI AG+  +  E++L  G RVVR MPN
Sbjct: 63  QQAELIVLSIKPQMAASVLTALENTITAQQLVLSIMAGISTTIIEESLQNGVRVVRAMPN 122

Query: 123 IAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIFP 182
             A V   A+ I  G+ A   DL  A E+FS VGT  QV E  MDAVTG+SGSGPA++F 
Sbjct: 123 TPALVQAGATAICGGRRAGEADLALAKELFSLVGTVYQVGERQMDAVTGVSGSGPAYVFS 182

Query: 183 VIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQGIH 242
            IEA++D  V  G+ R  A  LA QTVLG+A++  ++  HP  L+D V+SP GTTI  +H
Sbjct: 183 FIEALSDAGVKNGLPRDVATGLAVQTVLGSAQLLQQSNEHPAVLRDRVSSPGGTTIAALH 242

Query: 243 SLEEAGIRAAFMNAVIRASERSKEL 267
           +LE   +    M+AV  A +RSKEL
Sbjct: 243 TLENGRLHGLLMDAVDAAVKRSKEL 267


Lambda     K      H
   0.313    0.130    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 187
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 273
Length adjustment: 25
Effective length of query: 245
Effective length of database: 248
Effective search space:    60760
Effective search space used:    60760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_012471124.1 GLOV_RS15275 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.32110.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32110.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.