Alignments for a candidate for proA in Trichlorobacter lovleyi SZ

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_012471617.1 GLOV_RS17805 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_000020385.1:WP_012471617.1
          Length = 418

 Score =  387 bits (994), Expect = e-112
 Identities = 205/409 (50%), Positives = 279/409 (68%), Gaps = 4/409 (0%)

Query: 9   AKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLAL 68
           A+QAS  LA+LS+  KN +L K+AD LEA +  ++  NA+D+A  +  GLS+AMLDRL L
Sbjct: 14  ARQASIALARLSTTVKNEMLLKMADALEAGTTGLMCENAKDLAAGKEKGLSDAMLDRLML 73

Query: 69  TPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVD 128
              R+KG+AD +R+V +LADPVG+V       +GL + + R+PLGVIG++YE+RPNVT D
Sbjct: 74  DAKRIKGMADALREVASLADPVGEVTRMWKRPNGLMVGKMRIPLGVIGIVYESRPNVTAD 133

Query: 129 VASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEML 188
            A+LCLK+GNAV+LRGG E   +N A  A +Q  +K  G+P  A+  I   +R  V EML
Sbjct: 134 AAALCLKSGNAVVLRGGSEAIHSNRAIAATLQGVMKELGIPEAALSLIPFTEREGVLEML 193

Query: 189 RMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVNAKTQ 248
           + ++ ID++IPRGG  L +   E S IPVI    GVCH++VD S +   A ++I+NAKTQ
Sbjct: 194 KQEELIDLIIPRGGESLIRFVVENSRIPVIKHYKGVCHLFVDASADFEMATRIIINAKTQ 253

Query: 249 RPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKVVAVKAEE 308
           RP  CN +ETLL++K++A +F+P  +K + E  V L  D       +  PA  VA + E+
Sbjct: 254 RPGVCNALETLLIHKDVAATFIPPFAKSLGELQVELRGDEEF---RKYAPAAKVATE-ED 309

Query: 309 YDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNA 368
           +  E+L L L  K+V D+D AI HI ++G+ HS+ I+TRD  NAQRF+ EV+SS V VNA
Sbjct: 310 WAAEYLELILACKVVDDMDAAIDHINQYGSLHSEVIVTRDYANAQRFIREVNSSCVLVNA 369

Query: 369 STRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA 417
           STRF DGGQ GLGAE+ +ST KLH+ GPMGLE LTT K+I  GD  +RA
Sbjct: 370 STRFNDGGQLGLGAEIGISTTKLHSFGPMGLEDLTTTKFIVYGDGQVRA 418


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 418
Length adjustment: 32
Effective length of query: 385
Effective length of database: 386
Effective search space:   148610
Effective search space used:   148610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_012471617.1 GLOV_RS17805 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.22169.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22169.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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