GapMind for catabolism of small carbon sources

 

Protein WP_012473666.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012473666.1

Length: 431 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 10 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-arginine catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-citrulline catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-citrulline catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-lysine catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-proline catabolism davT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
putrescine catabolism gabT lo 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 (characterized) 32% 91% 176 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-lysine catabolism lysN lo 2-aminoadipate transaminase (EC 2.6.1.39) (characterized) 34% 82% 154.1 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-arginine catabolism astC lo succinylornithine transaminase (EC 2.6.1.81) (characterized) 33% 76% 148.3 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0
L-citrulline catabolism astC lo succinylornithine transaminase (EC 2.6.1.81) (characterized) 33% 76% 148.3 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) 57% 483.0

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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