GapMind for catabolism of small carbon sources

 

Protein WP_012473786.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012473786.1

Length: 342 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 6 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism ofoB med 2-oxoacid:ferredoxin oxidoreductase subunit beta; OFOR; EC 1.2.7.11 (characterized) 44% 74% 185.7 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9
L-leucine catabolism ofoB med 2-oxoacid:ferredoxin oxidoreductase subunit beta; OFOR; EC 1.2.7.11 (characterized) 44% 74% 185.7 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9
L-valine catabolism ofoB med 2-oxoacid:ferredoxin oxidoreductase subunit beta; OFOR; EC 1.2.7.11 (characterized) 44% 74% 185.7 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9
L-isoleucine catabolism vorA lo Ketoisovalerate oxidoreductase subunit VorA; VOR; 2-oxoisovalerate oxidoreductase alpha chain; 2-oxoisovalerate-ferredoxin oxidoreductase subunit alpha; EC 1.-.-.- (characterized) 31% 56% 107.1 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9
L-leucine catabolism vorA lo Ketoisovalerate oxidoreductase subunit VorA; VOR; 2-oxoisovalerate oxidoreductase alpha chain; 2-oxoisovalerate-ferredoxin oxidoreductase subunit alpha; EC 1.-.-.- (characterized) 31% 56% 107.1 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9
L-valine catabolism vorA lo Ketoisovalerate oxidoreductase subunit VorA; VOR; 2-oxoisovalerate oxidoreductase alpha chain; 2-oxoisovalerate-ferredoxin oxidoreductase subunit alpha; EC 1.-.-.- (characterized) 31% 56% 107.1 2-oxoglutarate oxidoreductase subunit KorB; Alpha-ketoglutarate oxidoreductase subunit beta; KG oxidoreductase subunit beta; KGO subunit beta; KOR subunit beta; EC 1.2.7.3 46% 308.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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