GapMind for catabolism of small carbon sources

 

Protein WP_012474003.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474003.1

Length: 663 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 10 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
4-hydroxybenzoate catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
L-lactate catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
L-lactate catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
acetate catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
acetate catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
2'-deoxyinosine catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
2'-deoxyinosine catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
2-deoxy-D-ribose catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
2-deoxy-D-ribose catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
ethanol catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
ethanol catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
L-threonine catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
L-threonine catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
thymidine catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
thymidine catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
L-tryptophan catabolism acs hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4
L-tryptophan catabolism acs hi acs: acetate--CoA ligase (EC 6.2.1.1) (TIGR02188) 100% 1010.4
propionate catabolism prpE hi acetate-CoA ligase (EC 6.2.1.1) (characterized) 50% 95% 701.4

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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