GapMind for catabolism of small carbon sources

 

Protein WP_012474461.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474461.1

Length: 566 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 6 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism ofoA lo 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 (characterized) 30% 96% 243.4 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7
L-leucine catabolism ofoA lo 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 (characterized) 30% 96% 243.4 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7
L-valine catabolism ofoA lo 2-oxoacid:ferredoxin oxidoreductase subunit alpha; OFOR; EC 1.2.7.11 (characterized) 30% 96% 243.4 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7
L-isoleucine catabolism vorB lo Ketoisovalerate oxidoreductase subunit VorB; VOR; 2-oxoisovalerate ferredoxin reductase subunit beta; 2-oxoisovalerate oxidoreductase beta chain; EC 1.2.7.7 (characterized) 35% 55% 107.8 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7
L-leucine catabolism vorB lo Ketoisovalerate oxidoreductase subunit VorB; VOR; 2-oxoisovalerate ferredoxin reductase subunit beta; 2-oxoisovalerate oxidoreductase beta chain; EC 1.2.7.7 (characterized) 35% 55% 107.8 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7
L-valine catabolism vorB lo Ketoisovalerate oxidoreductase subunit VorB; VOR; 2-oxoisovalerate ferredoxin reductase subunit beta; 2-oxoisovalerate oxidoreductase beta chain; EC 1.2.7.7 (characterized) 35% 55% 107.8 2-oxoglutarate:ferredoxin oxidoreductase α subunit (EC 1.2.7.3) 32% 277.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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