GapMind for catabolism of small carbon sources

 

Protein WP_012474473.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474473.1

Length: 469 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism lpd hi Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 (characterized) 41% 97% 335.9 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-isoleucine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 99% 497.7 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-leucine catabolism lpd hi Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 (characterized) 41% 97% 335.9 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-leucine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 99% 497.7 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-threonine catabolism lpd hi Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 (characterized) 41% 97% 335.9 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-threonine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 99% 497.7 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-valine catabolism lpd hi Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 (characterized) 41% 97% 335.9 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5
L-valine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 99% 497.7 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 40% 318.5

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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