GapMind for catabolism of small carbon sources

 

Protein WP_012474597.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474597.1

Length: 631 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 10 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
propionate catabolism prpE hi Propionate--CoA ligase (EC 6.2.1.17) (characterized) 61% 100% 828.6 4-hydroxybutyrate-CoA ligase (EC 6.2.1.40) 41% 487.6
4-hydroxybenzoate catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
L-lactate catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
acetate catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
2'-deoxyinosine catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
2-deoxy-D-ribose catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
ethanol catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
L-threonine catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
thymidine catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6
L-tryptophan catabolism acs med propionate-CoA ligase (EC 6.2.1.17) (characterized) 52% 92% 707.6 Propionate--CoA ligase (EC 6.2.1.17) 61% 828.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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