GapMind for catabolism of small carbon sources

 

Protein WP_012474621.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474621.1

Length: 609 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 32% 72% 54.7 DCOA aka OADA1 aka OADA aka STM0055 aka OADA2 aka STM3352, component of Na+-transporting oxalo-acetate decarboxylase. Subunit stoichiometries have been described (Balsera et al., 2011). The crystal structure of the carboxyltransferase at 1.7 A resolution shows a dimer of alpha(8)beta(8) barrels with an active site metal ion, identified spectroscopically as Zn2+ 30% 254.2
propionate catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 32% 72% 54.7 DCOA aka OADA1 aka OADA aka STM0055 aka OADA2 aka STM3352, component of Na+-transporting oxalo-acetate decarboxylase. Subunit stoichiometries have been described (Balsera et al., 2011). The crystal structure of the carboxyltransferase at 1.7 A resolution shows a dimer of alpha(8)beta(8) barrels with an active site metal ion, identified spectroscopically as Zn2+ 30% 254.2
L-threonine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 32% 72% 54.7 DCOA aka OADA1 aka OADA aka STM0055 aka OADA2 aka STM3352, component of Na+-transporting oxalo-acetate decarboxylase. Subunit stoichiometries have been described (Balsera et al., 2011). The crystal structure of the carboxyltransferase at 1.7 A resolution shows a dimer of alpha(8)beta(8) barrels with an active site metal ion, identified spectroscopically as Zn2+ 30% 254.2
L-valine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 32% 72% 54.7 DCOA aka OADA1 aka OADA aka STM0055 aka OADA2 aka STM3352, component of Na+-transporting oxalo-acetate decarboxylase. Subunit stoichiometries have been described (Balsera et al., 2011). The crystal structure of the carboxyltransferase at 1.7 A resolution shows a dimer of alpha(8)beta(8) barrels with an active site metal ion, identified spectroscopically as Zn2+ 30% 254.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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