GapMind for catabolism of small carbon sources

 

Protein WP_012474806.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474806.1

Length: 252 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism badH lo BadH (characterized) 34% 98% 146 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
phenylacetate catabolism badH lo BadH (characterized) 34% 98% 146 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
L-phenylalanine catabolism badH lo BadH (characterized) 34% 98% 146 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
D-sorbitol (glucitol) catabolism sdh lo Galactitol 2-dehydrogenase; GDH; Sorbitol dehydrogenase; SorbD; EC 1.1.1.16; EC 1.1.1.- (characterized) 36% 98% 134 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
L-arabinose catabolism xacB lo L-arabinose 1-dehydrogenase (EC 1.1.1.46) (characterized) 31% 91% 117.1 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
L-isoleucine catabolism ivdG lo 3-hydroxyacyl-CoA dehydrogenase IvdG; EC 1.1.1.35 (characterized, see rationale) 30% 100% 114.8 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
D-galactose catabolism galdh lo L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (characterized) 31% 91% 114.4 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6
lactose catabolism galdh lo L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (characterized) 31% 91% 114.4 3-hydroxyacyl-CoA dehydrogenase β subunit 35% 155.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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