GapMind for catabolism of small carbon sources

 

Protein WP_012474886.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474886.1

Length: 244 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 40 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-asparagine catabolism bgtA med ATPase (characterized, see rationale) 42% 78% 144.4 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-aspartate catabolism bgtA med ATPase (characterized, see rationale) 42% 78% 144.4 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-asparagine catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-aspartate catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-glutamate catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-histidine catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-leucine catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-proline catabolism aapP med AapP, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) (characterized) 41% 81% 142.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-histidine catabolism PA5503 lo Methionine import ATP-binding protein MetN 2, component of L-Histidine uptake porter, MetIQN (characterized) 40% 64% 150.2 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-cellobiose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-galactose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-glucose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
lactose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-maltose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-mannose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
sucrose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
trehalose catabolism glcV lo monosaccharide-transporting ATPase (EC 3.6.3.17) (characterized) 39% 63% 144.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-asparagine catabolism bztD lo BztD, component of Glutamate/glutamine/aspartate/asparagine porter (characterized) 38% 84% 144.4 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-aspartate catabolism bztD lo BztD, component of Glutamate/glutamine/aspartate/asparagine porter (characterized) 38% 84% 144.4 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-alanine catabolism Pf6N2E2_5405 lo ABC transporter for D-Alanine, ATPase component (characterized) 38% 90% 142.9 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-histidine catabolism BPHYT_RS24015 lo ABC transporter related (characterized, see rationale) 37% 87% 136.7 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-lysine catabolism hisP lo ABC transporter for L-Lysine, ATPase component (characterized) 37% 89% 136.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-glucosamine (chitosamine) catabolism AO353_21725 lo ABC transporter for D-Glucosamine, putative ATPase component (characterized) 38% 92% 136 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-asparagine catabolism peb1C lo PEB1C, component of Uptake system for glutamate and aspartate (characterized) 36% 89% 135.2 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-aspartate catabolism peb1C lo PEB1C, component of Uptake system for glutamate and aspartate (characterized) 36% 89% 135.2 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-arabinose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 33% 60% 132.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-fructose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 33% 60% 132.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
sucrose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 33% 60% 132.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-xylose catabolism araV lo AraV, component of Arabinose, fructose, xylose porter (characterized) 33% 60% 132.5 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-arginine catabolism artP lo L-Arginine ABC transporter, ATPase component (characterized) 37% 92% 129 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-citrulline catabolism AO353_03040 lo ABC transporter for L-Arginine and L-Citrulline, ATPase component (characterized) 36% 92% 128.6 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
L-citrulline catabolism PS417_17605 lo ATP-binding cassette domain-containing protein; SubName: Full=Amino acid transporter; SubName: Full=Histidine ABC transporter ATP-binding protein; SubName: Full=Histidine transport system ATP-binding protein (characterized, see rationale) 37% 89% 128.6 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-cellobiose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-glucose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
lactose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-maltose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
sucrose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
trehalose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
D-xylose catabolism gtsD lo ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 32% 56% 116.3 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7
xylitol catabolism HSERO_RS17020 lo ABC-type sugar transport system, ATPase component protein (characterized, see rationale) 35% 54% 109.8 Uncharacterized ABC transporter ATP-binding protein Rv0986 42% 188.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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