GapMind for catabolism of small carbon sources

 

Protein WP_012474888.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012474888.1

Length: 494 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism lpd med Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of branched-chain alpha-keto acid dehydrogenase complex; LPD-Val (uncharacterized) 36% 99% 286.2 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-isoleucine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 98% 419.4 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-leucine catabolism lpd med Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of branched-chain alpha-keto acid dehydrogenase complex; LPD-Val (uncharacterized) 36% 99% 286.2 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-leucine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 98% 419.4 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-threonine catabolism lpd med Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of branched-chain alpha-keto acid dehydrogenase complex; LPD-Val (uncharacterized) 36% 99% 286.2 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-threonine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 98% 419.4 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-valine catabolism lpd med Dihydrolipoyl dehydrogenase; EC 1.8.1.4; Dihydrolipoamide dehydrogenase; E3 component of branched-chain alpha-keto acid dehydrogenase complex; LPD-Val (uncharacterized) 36% 99% 286.2 mercury(II) reductase (EC 1.16.1.1) 33% 257.3
L-valine catabolism lpd hi lpdA: dihydrolipoyl dehydrogenase (EC 1.8.1.4) (TIGR01350) 98% 419.4 mercury(II) reductase (EC 1.16.1.1) 33% 257.3

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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