GapMind for Amino acid biosynthesis

 

Protein WP_012475118.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012475118.1

Length: 187 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 3 steps in Amino acid biosynthesis

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine biosynthesis leuD med 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized) 47% 71% 154.1 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 35% 102.8
L-isoleucine biosynthesis leuD hi 3-isopropylmalate dehydratase, small subunit (TIGR02087) 99% 111.7 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 35% 102.8
L-leucine biosynthesis leuD med 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized) 47% 71% 154.1 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 35% 102.8
L-leucine biosynthesis leuD hi 3-isopropylmalate dehydratase, small subunit (TIGR02087) 99% 111.7 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 35% 102.8
L-lysine biosynthesis lysU lo Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 (characterized) 35% 96% 102.8 2-(omega-methylthio)alkylmalate dehydratase (subunit 1/2) (EC 4.2.1.170); 3-isopropylmalate dehydratase (EC 4.2.1.33) 47% 154.1

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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