GapMind for catabolism of small carbon sources

 

Protein WP_012475486.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012475486.1

Length: 265 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 24 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 36% 99% 150.2 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
propionate catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 36% 99% 150.2 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-threonine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 36% 99% 150.2 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-valine catabolism hpcD lo 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 36% 99% 150.2 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-isoleucine catabolism ech lo enoyl-CoA hydratase (EC 4.2.1.17); DELTA3,5-DELTA2,4-dienoyl-CoA isomerase (EC 5.3.3.21) (characterized) 35% 84% 139.8 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
4-hydroxybenzoate catabolism paaF lo enoyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 99% 138.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
phenylacetate catabolism paaF lo enoyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 99% 138.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-phenylalanine catabolism paaF lo enoyl-CoA hydratase (EC 4.2.1.17) (characterized) 33% 99% 138.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
4-hydroxybenzoate catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-arginine catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-citrulline catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-lysine catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
phenylacetate catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-phenylalanine catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-proline catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-valine catabolism ech lo crotonase (EC 4.2.1.150) (characterized) 31% 98% 134.4 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
4-hydroxybenzoate catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 31% 99% 132.5 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
phenylacetate catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 31% 99% 132.5 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-phenylalanine catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 31% 99% 132.5 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
4-hydroxybenzoate catabolism badK lo BadK (characterized) 33% 98% 131.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
phenylacetate catabolism badK lo BadK (characterized) 33% 98% 131.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-phenylalanine catabolism badK lo BadK (characterized) 33% 98% 131.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-leucine catabolism liuC lo Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (characterized) 31% 100% 111.3 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3
L-valine catabolism bch lo 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (characterized) 31% 78% 87.8 Enoyl-CoA hydratase domain-containing protein 3, mitochondrial 49% 227.3

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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