GapMind for catabolism of small carbon sources

 

Protein WP_012475539.1 in Chlorobium phaeobacteroides BS1

Annotation: NCBI__GCF_000020545.1:WP_012475539.1

Length: 244 amino acids

Source: GCF_000020545.1 in NCBI

Candidate for 33 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 99% 147.9 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-leucine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 99% 147.9 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-valine catabolism livG lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 34% 99% 147.9 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-phenylalanine catabolism livG lo High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG (characterized, see rationale) 34% 98% 146.7 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-isoleucine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 36% 100% 146 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-leucine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 36% 100% 146 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-valine catabolism livF lo ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM (characterized) 36% 100% 146 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-alanine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-histidine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-leucine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-proline catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-serine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-threonine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 34% 94% 144.4 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-phenylalanine catabolism livF lo High-affinity branched-chain amino acid transport ATP-binding protein (characterized, see rationale) 35% 99% 139 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-proline catabolism opuBA lo BilEA aka OpuBA protein, component of A proline/glycine betaine uptake system. Also reported to be a bile exclusion system that exports oxgall and other bile compounds, BilEA/EB or OpuBA/BB (required for normal virulence) (characterized) 35% 69% 136.7 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-isoleucine catabolism natA lo NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 35% 96% 132.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-valine catabolism natA lo NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 35% 96% 132.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-alanine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 33% 99% 131.7 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-serine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 33% 99% 131.7 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-threonine catabolism braG lo High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 33% 99% 131.7 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-arginine catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 94% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-glutamate catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 94% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-histidine catabolism braG lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 94% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-proline catabolism HSERO_RS00900 lo ABC transporter ATP-binding protein (characterized, see rationale) 32% 96% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-serine catabolism Ac3H11_1692 lo ABC transporter ATP-binding protein (characterized, see rationale) 32% 96% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-tyrosine catabolism Ac3H11_1692 lo ABC transporter ATP-binding protein (characterized, see rationale) 32% 96% 127.5 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-isoleucine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 94% 126.3 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-leucine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 94% 126.3 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-proline catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 94% 126.3 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-valine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 94% 126.3 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
D-alanine catabolism AZOBR_RS08250 lo Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 32% 98% 124.8 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-proline catabolism AZOBR_RS08250 lo Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 32% 98% 124.8 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1
L-histidine catabolism natE lo NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 32% 91% 120.9 lipopolysaccharide ABC transporter, ATP-binding protein LptB; EC 3.6.3.- 55% 268.1

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000020545.1

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