GapMind for catabolism of small carbon sources

 

Protein WP_012497796.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_012497796.1

Length: 161 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arabinose catabolism aldox-small med Glyceraldehyde dehydrogenase small chain; Glyceraldehyde dehydrogenase subunit C; Glyceraldehyde dehydrogenase subunit gamma; EC 1.2.99.8 (characterized) 57% 93% 177.2 anaerobic carbon-monoxide dehydrogenase (subunit 1/3) (EC 1.2.7.4) 55% 171.0
D-xylose catabolism aldox-small med Glyceraldehyde dehydrogenase small chain; Glyceraldehyde dehydrogenase subunit C; Glyceraldehyde dehydrogenase subunit gamma; EC 1.2.99.8 (characterized) 57% 93% 177.2 anaerobic carbon-monoxide dehydrogenase (subunit 1/3) (EC 1.2.7.4) 55% 171.0
4-hydroxybenzoate catabolism hcrC med 4-hydroxybenzoyl-CoA reductase HbaB subunit (EC 1.3.7.9) (characterized) 47% 91% 137.5 glyceraldehyde dehydrogenase (FAD-containing) (subunit 1/3) (EC 1.2.99.8) 58% 185.7
2-deoxy-D-ribose catabolism drdehyd-alpha lo 2-deoxy-D-ribose dehydrogenase α subunit (characterized) 35% 100% 96.3 glyceraldehyde dehydrogenase (FAD-containing) (subunit 1/3) (EC 1.2.99.8) 58% 185.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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