Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_012501603.1 CPAR_RS01790 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_000020505.1:WP_012501603.1
Length = 1227
Score = 1471 bits (3808), Expect = 0.0
Identities = 737/1225 (60%), Positives = 931/1225 (76%), Gaps = 7/1225 (0%)
Query: 6 EQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIA 65
+ L + +RILVLDG MGTMIQ + L+E D+RGERFA LKGNNDLLV+++P++I
Sbjct: 3 DNLYGLIEQRILVLDGAMGTMIQRHGLDEQDYRGERFASHSHPLKGNNDLLVITQPDIIR 62
Query: 66 AIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEK 125
+IH + +AGADI+ET TFN+ I+ +DYQ++ L+ E+N AAAK+AR+ ADE+TA+TP+K
Sbjct: 63 SIHCDFLDAGADIVETCTFNANPISQSDYQLQHLTKELNVAAAKVARSAADEFTAKTPDK 122
Query: 126 PRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFD 185
PR+VAG +GPTN+T S+SPDVN+P FR +TF +V Y + L EGG DL+L+ETVFD
Sbjct: 123 PRFVAGSIGPTNKTLSLSPDVNNPGFRAVTFQEVVDNYTAQLEGLHEGGVDLLLVETVFD 182
Query: 186 TLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEAL-TFG 244
TLN KAA++A++ G ++P+M+SGT+ DASGRTLSGQTTEAF+ S+ H +L + G
Sbjct: 183 TLNCKAALYAIEQYAAKTGWQVPVMVSGTVVDASGRTLSGQTTEAFWISISHMPSLLSVG 242
Query: 245 LNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAQAGFL 304
LNCALG ++R +++ LS IA YV+ +PNAGLPN FGEYD + MA QI +A++GF+
Sbjct: 243 LNCALGSKQMRPFIEALSNIAGSYVSVYPNAGLPNEFGEYDDSPEYMAAQIAGFAESGFV 302
Query: 305 NIVGGCCGTTPQHIAAMSRAVEGLAPRKLPEIPVACRLSGLEPLNIGEDSLFVNVGERTN 364
NIVGGCCGTTP HI A++ AV+ L PRK P +LSGLEPL + E + F+NVGERTN
Sbjct: 303 NIVGGCCGTTPTHIRAIAEAVKTLTPRKRPANEHVLKLSGLEPLVVDETTGFINVGERTN 362
Query: 365 VTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDINMDEGMLDAEAAMVRFLNLIAGEP 424
VTGS KF RLIKE Y EAL +ARQQVENGAQ+ID+N+DEGMLD+E +V FLNLIA EP
Sbjct: 363 VTGSRKFARLIKEANYDEALSIARQQVENGAQVIDVNLDEGMLDSEKVIVEFLNLIASEP 422
Query: 425 DIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMA 484
+IA+VP+MIDSSKW VIE GL+C QGK IVNSIS+KEG + F HA+ + +YGAA VVMA
Sbjct: 423 EIAKVPVMIDSSKWAVIENGLRCTQGKSIVNSISLKEGEEPFKEHARKIMQYGAATVVMA 482
Query: 485 FDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIG 544
FDEQGQAD+ R+IEIC RAYKILTEEVGFPPEDIIFDPN+ VATGI+EHNNYA DFI
Sbjct: 483 FDEQGQADSLHRRIEICSRAYKILTEEVGFPPEDIIFDPNVLTVATGIDEHNNYALDFIE 542
Query: 545 ACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAI 604
+ IK+ LPHA +SGG+SNVSFSFRGN+PVREA+H FLY+AI G+DMGIVNA QL I
Sbjct: 543 SVRWIKQNLPHAKVSGGISNVSFSFRGNEPVREAMHTAFLYHAIHAGLDMGIVNAAQLGI 602
Query: 605 YDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRGSKTDDTANAQQAEWRSWEVNKRLE 664
Y+D+ EL VEDV+LNRRDD TERL+ AE R + A A+ AEWR+ V +RL+
Sbjct: 603 YEDIDPELLVYVEDVLLNRRDDATERLVAFAETIRDG--GEKAEAKTAEWRNAPVEERLK 660
Query: 665 YSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARV 724
++LVKGI ++I++DTEEARQ P+EVIEGPLM+GMN +GDLF EGKMFLPQVVKSARV
Sbjct: 661 HALVKGIVDYIDEDTEEARQLYPSPLEVIEGPLMNGMNHIGDLFAEGKMFLPQVVKSARV 720
Query: 725 MKQAVAYLEPFIEASKEQG---KTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLG 781
MK++VA L P+IE K + K+++ATVKGDVHDIGKNIV VVL CNN+++VD+G
Sbjct: 721 MKRSVAVLVPYIEEEKAKSCDTSAKAKVLLATVKGDVHDIGKNIVSVVLACNNFDVVDIG 780
Query: 782 VMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATTSKAH 841
VM+P +KIL + D++GLSGLITPSL+EM +VAKEMER G IPL+IGGATTSK H
Sbjct: 781 VMMPCDKILDAVVKEKPDVLGLSGLITPSLEEMAHVAKEMERLGMNIPLIIGGATTSKVH 840
Query: 842 TAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRT 901
TAVK+ NYSG V+V +ASR+V VV+ L + QR+ ++A E E +R H +
Sbjct: 841 TAVKLAPNYSGAVVHVLDASRSVPVVSNLCNPAQREGYIAALNSEQEAMRKSHAERTAAK 900
Query: 902 PPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVE-ASIETLRNYIDWTPFFMTWSLAGKY 960
++L+AARDN A DW+A T + GV +E ++ LR+YIDWTPFF +W L G Y
Sbjct: 901 KYISLDAARDNRLAIDWEAETIDKPAQTGVTVLEDVTVGALRSYIDWTPFFRSWELHGVY 960
Query: 961 PRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRT 1020
P+ILEDE VG EA +LF DA +LD++ +EK L +GV G+FPAN +GDDI +Y D+ R+
Sbjct: 961 PQILEDEKVGEEATKLFNDATALLDRIDSEKLLGIKGVAGIFPANSIGDDIFVYSDDERS 1020
Query: 1021 HVINVSHHLRQQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQH 1080
+ V H LRQQ+EK G AN LADFVAP+ SG D+IG F VT GL +L F A++
Sbjct: 1021 MIRTVLHTLRQQSEKHGEANLALADFVAPRESGVNDWIGCFTVTAGLGIQSLLQEFAAEN 1080
Query: 1081 DDYNKIMVKALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYP 1140
DDY++IM +ALADRLAEAFAE LHE+VR+ WGYAP E L +EELI E Y+GIRPAPGYP
Sbjct: 1081 DDYHRIMTQALADRLAEAFAEMLHEKVRRELWGYAPGEILGSEELIAEQYRGIRPAPGYP 1140
Query: 1141 ACPEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQV 1200
ACP+HTEKATI++LL E TG+ LTE+FAM P ASV G YF++P SKY+ + +I +DQV
Sbjct: 1141 ACPDHTEKATIFDLLNAEAATGVTLTETFAMNPAASVCGLYFANPASKYFVLGKIGKDQV 1200
Query: 1201 EDYARRKGMSVTEVERWLAPNLGYD 1225
EDYA RKG+ V+E E+WLAP L YD
Sbjct: 1201 EDYANRKGLEVSEAEKWLAPALNYD 1225
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3529
Number of extensions: 139
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 1227
Length adjustment: 47
Effective length of query: 1180
Effective length of database: 1180
Effective search space: 1392400
Effective search space used: 1392400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Align candidate WP_012501603.1 CPAR_RS01790 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.17313.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17313.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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